miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1493 5' -61.4 NC_001335.1 + 38495 0.66 0.428197
Target:  5'- uGACuGCGGCagacGGCGUUUcGuCGCCGuGGAa -3'
miRNA:   3'- gCUGcUGCCG----UCGCAGA-C-GCGGC-CCU- -5'
1493 5' -61.4 NC_001335.1 + 17489 0.66 0.41911
Target:  5'- -uGCGAaGGCAGCGgaacUGCCGGGGa -3'
miRNA:   3'- gcUGCUgCCGUCGCagacGCGGCCCU- -5'
1493 5' -61.4 NC_001335.1 + 1962 0.66 0.400415
Target:  5'- aGGCGcagauccACGGCGGCGUCcUG-GUCGaGGAc -3'
miRNA:   3'- gCUGC-------UGCCGUCGCAG-ACgCGGC-CCU- -5'
1493 5' -61.4 NC_001335.1 + 7996 0.67 0.374649
Target:  5'- aCGACG-UGGUGGCGUUccGCGCCGacgugaaGGAg -3'
miRNA:   3'- -GCUGCuGCCGUCGCAGa-CGCGGC-------CCU- -5'
1493 5' -61.4 NC_001335.1 + 34151 0.67 0.342872
Target:  5'- uGACGACGaGUucuGGCGUCUG-GCCaaGGAg -3'
miRNA:   3'- gCUGCUGC-CG---UCGCAGACgCGGc-CCU- -5'
1493 5' -61.4 NC_001335.1 + 34280 0.67 0.342872
Target:  5'- uGugGcCGGCGGUGU--GCGCCGGu- -3'
miRNA:   3'- gCugCuGCCGUCGCAgaCGCGGCCcu -5'
1493 5' -61.4 NC_001335.1 + 17229 0.67 0.335043
Target:  5'- -uGCGACcuGGCcgagGGcCGUCgccaGCGCCGGGAu -3'
miRNA:   3'- gcUGCUG--CCG----UC-GCAGa---CGCGGCCCU- -5'
1493 5' -61.4 NC_001335.1 + 14273 0.68 0.319781
Target:  5'- aCGACGAC-GCAGUGUugaCUGCGgCGGu- -3'
miRNA:   3'- -GCUGCUGcCGUCGCA---GACGCgGCCcu -5'
1493 5' -61.4 NC_001335.1 + 32678 0.68 0.312347
Target:  5'- aCGGCGGCGGCGGUggccagcagcaGUCUcGCGCCc--- -3'
miRNA:   3'- -GCUGCUGCCGUCG-----------CAGA-CGCGGcccu -5'
1493 5' -61.4 NC_001335.1 + 1160 0.69 0.263984
Target:  5'- gGGCGGCguaGGCGGCGUCggaGgCGGGGg -3'
miRNA:   3'- gCUGCUG---CCGUCGCAGacgCgGCCCU- -5'
1493 5' -61.4 NC_001335.1 + 23117 0.7 0.245192
Target:  5'- gGACGACGGCGuCGUCUccGCGauGGGu -3'
miRNA:   3'- gCUGCUGCCGUcGCAGA--CGCggCCCu -5'
1493 5' -61.4 NC_001335.1 + 37856 0.7 0.232709
Target:  5'- gGGCGuuCGGCAGCGUCUuCGCCaccgaccGGGc -3'
miRNA:   3'- gCUGCu-GCCGUCGCAGAcGCGG-------CCCu -5'
1493 5' -61.4 NC_001335.1 + 14061 0.71 0.210946
Target:  5'- cCGGCaGCGuguGCAGCGUCggUGCGuuGGGGu -3'
miRNA:   3'- -GCUGcUGC---CGUCGCAG--ACGCggCCCU- -5'
1493 5' -61.4 NC_001335.1 + 49796 0.71 0.205655
Target:  5'- cCGACGGCGGU-GCG-CUGC-CCGGaGAa -3'
miRNA:   3'- -GCUGCUGCCGuCGCaGACGcGGCC-CU- -5'
1493 5' -61.4 NC_001335.1 + 41508 0.71 0.195418
Target:  5'- cCGACGA-GGcCAGCuaguccugGUCUGCGCCGGc- -3'
miRNA:   3'- -GCUGCUgCC-GUCG--------CAGACGCGGCCcu -5'
1493 5' -61.4 NC_001335.1 + 20257 0.72 0.158819
Target:  5'- cCGGCGACGGCcaggucgagGGCGUCgaUGUGuucaCCGGGGa -3'
miRNA:   3'- -GCUGCUGCCG---------UCGCAG--ACGC----GGCCCU- -5'
1493 5' -61.4 NC_001335.1 + 29334 1.08 0.000319
Target:  5'- cCGACGACGGCAGCGUCUGCGCCGGGAu -3'
miRNA:   3'- -GCUGCUGCCGUCGCAGACGCGGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.