miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1494 5' -55.9 NC_001335.1 + 2802 0.66 0.636413
Target:  5'- gGCAUCUGGAucgugucGGUUGGAcuguccGGGGUGUUCc -3'
miRNA:   3'- -CGUGGACCU-------CCAGCUUc-----CUCCGCAAG- -5'
1494 5' -55.9 NC_001335.1 + 2116 0.66 0.636413
Target:  5'- gGUuCCUGGcuGUCGAGGuGgccccucGGGCGUUCg -3'
miRNA:   3'- -CGuGGACCucCAGCUUC-C-------UCCGCAAG- -5'
1494 5' -55.9 NC_001335.1 + 29746 0.67 0.62651
Target:  5'- -gGCCgaucaGGAGGUCu-GGGAGGCaaUCg -3'
miRNA:   3'- cgUGGa----CCUCCAGcuUCCUCCGcaAG- -5'
1494 5' -55.9 NC_001335.1 + 26864 0.67 0.581552
Target:  5'- cCGCCUGGAGGUCGucucGGuucuccuGGGUGa-- -3'
miRNA:   3'- cGUGGACCUCCAGCuu--CC-------UCCGCaag -5'
1494 5' -55.9 NC_001335.1 + 25778 0.68 0.554446
Target:  5'- uGCACCgGGAguugcagcGGUCGGAacccucgccgucggcGGGcuGGCGUUCg -3'
miRNA:   3'- -CGUGGaCCU--------CCAGCUU---------------CCU--CCGCAAG- -5'
1494 5' -55.9 NC_001335.1 + 29264 0.68 0.518219
Target:  5'- uGCGCCUGGuaGUCGAcuGAGGCcaUCa -3'
miRNA:   3'- -CGUGGACCucCAGCUucCUCCGcaAG- -5'
1494 5' -55.9 NC_001335.1 + 2691 0.7 0.437218
Target:  5'- gGCACCUGGcccgcuuaUCGAcgcccAGGAuGGCGUUCg -3'
miRNA:   3'- -CGUGGACCucc-----AGCU-----UCCU-CCGCAAG- -5'
1494 5' -55.9 NC_001335.1 + 34739 0.7 0.418115
Target:  5'- uGCGCCugaUGGAGGgCGggGGAgucggGGCGa-- -3'
miRNA:   3'- -CGUGG---ACCUCCaGCuuCCU-----CCGCaag -5'
1494 5' -55.9 NC_001335.1 + 10805 0.73 0.285052
Target:  5'- cCACCUGGGGuUCGAGGGAcuacgcagcgagGGCGUa- -3'
miRNA:   3'- cGUGGACCUCcAGCUUCCU------------CCGCAag -5'
1494 5' -55.9 NC_001335.1 + 30136 1.11 0.000557
Target:  5'- aGCACCUGGAGGUCGAAGGAGGCGUUCu -3'
miRNA:   3'- -CGUGGACCUCCAGCUUCCUCCGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.