Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 32000 | 1.11 | 0.000358 |
Target: 5'- gCUCCAGCUCGGUCAGCACCGACCUGCu -3' miRNA: 3'- -GAGGUCGAGCCAGUCGUGGCUGGACG- -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 758 | 0.82 | 0.045466 |
Target: 5'- aUCCGGCgUGaGUgCAGCGCCGACCUGCu -3' miRNA: 3'- gAGGUCGaGC-CA-GUCGUGGCUGGACG- -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 1377 | 0.76 | 0.136692 |
Target: 5'- uCUCCAGCUCGGUggggGGCACCGggguguuggGgCUGCu -3' miRNA: 3'- -GAGGUCGAGCCAg---UCGUGGC---------UgGACG- -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 41500 | 0.75 | 0.144367 |
Target: 5'- -gCCAGCUaguccUGGUCuGCGCCGGCCccgGCa -3' miRNA: 3'- gaGGUCGA-----GCCAGuCGUGGCUGGa--CG- -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 6454 | 0.72 | 0.245138 |
Target: 5'- aUCgAGCUUGGaCAGCGuCCGAUCUGg -3' miRNA: 3'- gAGgUCGAGCCaGUCGU-GGCUGGACg -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 32082 | 0.72 | 0.245138 |
Target: 5'- -gCCAGCa-GGUCGGUGCUGACCgaGCu -3' miRNA: 3'- gaGGUCGagCCAGUCGUGGCUGGa-CG- -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 28785 | 0.72 | 0.257926 |
Target: 5'- gUCCGGUgcUGGUUGGCACCGACCc-- -3' miRNA: 3'- gAGGUCGa-GCCAGUCGUGGCUGGacg -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 7876 | 0.71 | 0.278124 |
Target: 5'- -gUCGGCUgcCGuGUCAGCGaCGGCCUGCu -3' miRNA: 3'- gaGGUCGA--GC-CAGUCGUgGCUGGACG- -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 12729 | 0.7 | 0.34132 |
Target: 5'- gUCCAGgUCGGggauccggcgcuugaUCAuGCGCuCGAUCUGCu -3' miRNA: 3'- gAGGUCgAGCC---------------AGU-CGUG-GCUGGACG- -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 6100 | 0.68 | 0.406914 |
Target: 5'- gUCCAGCU---UCAGC-UCGAUCUGCa -3' miRNA: 3'- gAGGUCGAgccAGUCGuGGCUGGACG- -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 16384 | 0.68 | 0.406914 |
Target: 5'- uCUCCAGCgUCGGggCAGCGUCGAggcggCUGCc -3' miRNA: 3'- -GAGGUCG-AGCCa-GUCGUGGCUg----GACG- -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 48563 | 0.68 | 0.416115 |
Target: 5'- --aCGGCUUGGUCG--ACCGGCUUGUa -3' miRNA: 3'- gagGUCGAGCCAGUcgUGGCUGGACG- -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 33496 | 0.68 | 0.425443 |
Target: 5'- aUCCGGCgugugCGGUucaaccucaaCAGCgacaugGCCGAgCUGCg -3' miRNA: 3'- gAGGUCGa----GCCA----------GUCG------UGGCUgGACG- -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 16192 | 0.67 | 0.454155 |
Target: 5'- gCUCC-GCU-GGUCGGCaucgugGCCGGUCUGCu -3' miRNA: 3'- -GAGGuCGAgCCAGUCG------UGGCUGGACG- -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 39617 | 0.67 | 0.463957 |
Target: 5'- -cUCGGCaacUCaGUCGGCACCcGGCaCUGCa -3' miRNA: 3'- gaGGUCG---AGcCAGUCGUGG-CUG-GACG- -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 9940 | 0.67 | 0.473868 |
Target: 5'- gUCCAGCUCucgcuguaGGUgagUGGCugCGACUgcUGCa -3' miRNA: 3'- gAGGUCGAG--------CCA---GUCGugGCUGG--ACG- -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 26734 | 0.67 | 0.477862 |
Target: 5'- aUCCAGgagaccgcugacuacCUCGGugUCAGCACCaaGACCguccGCa -3' miRNA: 3'- gAGGUC---------------GAGCC--AGUCGUGG--CUGGa---CG- -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 35623 | 0.67 | 0.483885 |
Target: 5'- -aCguGCUCGGUCAGC---GACUUGUg -3' miRNA: 3'- gaGguCGAGCCAGUCGuggCUGGACG- -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 24342 | 0.67 | 0.483885 |
Target: 5'- -aUCAGCUCcuuGGUCGucGCACCuGCCUGa -3' miRNA: 3'- gaGGUCGAG---CCAGU--CGUGGcUGGACg -5' |
|||||||
1495 | 3' | -58.1 | NC_001335.1 | + | 9102 | 0.67 | 0.48792 |
Target: 5'- gUCCGGUUCGGaagCGGCAcaacgggaacgacgcCCaGACCgUGCg -3' miRNA: 3'- gAGGUCGAGCCa--GUCGU---------------GG-CUGG-ACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home