Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14956 | 3' | -50.3 | NC_003687.1 | + | 4613 | 0.66 | 0.496174 |
Target: 5'- gGCAACUGCCcu-GAAaaaACCAGGUCa -3' miRNA: 3'- -CGUUGAUGGuacCUUgcgUGGUUCGG- -5' |
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14956 | 3' | -50.3 | NC_003687.1 | + | 7269 | 0.66 | 0.484144 |
Target: 5'- uGUGACcacgGCCAaaUGGAGgGCAgCCAAGgCa -3' miRNA: 3'- -CGUUGa---UGGU--ACCUUgCGU-GGUUCgG- -5' |
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14956 | 3' | -50.3 | NC_003687.1 | + | 5684 | 0.67 | 0.460518 |
Target: 5'- uCGAUaGCCAaGGGAgGCGCCAuAGCa -3' miRNA: 3'- cGUUGaUGGUaCCUUgCGUGGU-UCGg -5' |
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14956 | 3' | -50.3 | NC_003687.1 | + | 6509 | 0.68 | 0.383042 |
Target: 5'- uGCAGCgcaACCGcagcaggucUGGGACucCACCAAGUCc -3' miRNA: 3'- -CGUUGa--UGGU---------ACCUUGc-GUGGUUCGG- -5' |
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14956 | 3' | -50.3 | NC_003687.1 | + | 7275 | 0.69 | 0.342832 |
Target: 5'- -gAACUGacCCAgaGGGCGCACCGGGCa -3' miRNA: 3'- cgUUGAU--GGUacCUUGCGUGGUUCGg -5' |
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14956 | 3' | -50.3 | NC_003687.1 | + | 469 | 0.69 | 0.3239 |
Target: 5'- gGUggUUGCCAUGGccAugGuCAUCAAcGCCa -3' miRNA: 3'- -CGuuGAUGGUACC--UugC-GUGGUU-CGG- -5' |
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14956 | 3' | -50.3 | NC_003687.1 | + | 8774 | 0.69 | 0.314729 |
Target: 5'- aGUGACUGgCuguUGGAGCaucuaagcCGCCGAGCCa -3' miRNA: 3'- -CGUUGAUgGu--ACCUUGc-------GUGGUUCGG- -5' |
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14956 | 3' | -50.3 | NC_003687.1 | + | 491 | 0.77 | 0.098249 |
Target: 5'- uGCGG--GCCAguggaaGGGACGCugCAAGCCa -3' miRNA: 3'- -CGUUgaUGGUa-----CCUUGCGugGUUCGG- -5' |
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14956 | 3' | -50.3 | NC_003687.1 | + | 3502 | 1.16 | 0.000101 |
Target: 5'- aGCAACUACCAUGGAACGCACCAAGCCg -3' miRNA: 3'- -CGUUGAUGGUACCUUGCGUGGUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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