miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1496 3' -58.2 NC_001335.1 + 442 0.66 0.602657
Target:  5'- -aGGG-CCGCGCaCUggCGCGGCCuugagauCCg -3'
miRNA:   3'- ggCCCaGGCGUG-GGaaGUGCUGGu------GG- -5'
1496 3' -58.2 NC_001335.1 + 5411 0.66 0.581528
Target:  5'- aCCucGUCgCGCuucacgccaaGCCCUUCGCGGCCAa- -3'
miRNA:   3'- -GGccCAG-GCG----------UGGGAAGUGCUGGUgg -5'
1496 3' -58.2 NC_001335.1 + 7290 0.73 0.233966
Target:  5'- gCGGGgcucgaggUCGCugCCUcaaUACGGCCACCg -3'
miRNA:   3'- gGCCCa-------GGCGugGGAa--GUGCUGGUGG- -5'
1496 3' -58.2 NC_001335.1 + 7370 0.7 0.378082
Target:  5'- -aGGGcucCCGCACCCUgu-CGAUCugCa -3'
miRNA:   3'- ggCCCa--GGCGUGGGAaguGCUGGugG- -5'
1496 3' -58.2 NC_001335.1 + 9599 0.7 0.361277
Target:  5'- uCCGGGggaacgUCGcCGCCCUUCAUGAuCCGgUa -3'
miRNA:   3'- -GGCCCa-----GGC-GUGGGAAGUGCU-GGUgG- -5'
1496 3' -58.2 NC_001335.1 + 10584 0.68 0.477343
Target:  5'- aCCGGGaccaccagacagUCGCACCCU--GCGuGCCACUu -3'
miRNA:   3'- -GGCCCa-----------GGCGUGGGAagUGC-UGGUGG- -5'
1496 3' -58.2 NC_001335.1 + 11693 0.69 0.440873
Target:  5'- cCUGGGcaccaUgCGgACCaaggUCGCGACCGCCu -3'
miRNA:   3'- -GGCCC-----AgGCgUGGga--AGUGCUGGUGG- -5'
1496 3' -58.2 NC_001335.1 + 11737 0.67 0.550146
Target:  5'- gCCGGGUUCGCACggacgguuuCCgcCGaGGCCACg -3'
miRNA:   3'- -GGCCCAGGCGUG---------GGaaGUgCUGGUGg -5'
1496 3' -58.2 NC_001335.1 + 12536 0.68 0.459876
Target:  5'- -aGGaGUaacCCGUGgCCUaCGCGACCGCCg -3'
miRNA:   3'- ggCC-CA---GGCGUgGGAaGUGCUGGUGG- -5'
1496 3' -58.2 NC_001335.1 + 13575 0.71 0.340221
Target:  5'- aCCGGG-CCGCgACCUugUUCGCGuucgcguagaccuugGCCAUCa -3'
miRNA:   3'- -GGCCCaGGCG-UGGG--AAGUGC---------------UGGUGG- -5'
1496 3' -58.2 NC_001335.1 + 14571 0.67 0.560555
Target:  5'- gCUGGGUCUGUACU----ACGGCC-CCa -3'
miRNA:   3'- -GGCCCAGGCGUGGgaagUGCUGGuGG- -5'
1496 3' -58.2 NC_001335.1 + 15200 0.69 0.440873
Target:  5'- gUCGGGgaugUCCGCGaacUCCUUgAacaccuCGACCACCg -3'
miRNA:   3'- -GGCCC----AGGCGU---GGGAAgU------GCUGGUGG- -5'
1496 3' -58.2 NC_001335.1 + 17563 0.73 0.246013
Target:  5'- cCCGGcaguUCCGCugCCUUCgcaGCGAUCugCu -3'
miRNA:   3'- -GGCCc---AGGCGugGGAAG---UGCUGGugG- -5'
1496 3' -58.2 NC_001335.1 + 18807 0.66 0.613261
Target:  5'- aCGGGU-CGUACgCgaugCACGACauCACCg -3'
miRNA:   3'- gGCCCAgGCGUGgGaa--GUGCUG--GUGG- -5'
1496 3' -58.2 NC_001335.1 + 18961 0.71 0.329257
Target:  5'- gUGGGguuuagCC-CACCCUgcUCGCGGCCgACCu -3'
miRNA:   3'- gGCCCa-----GGcGUGGGA--AGUGCUGG-UGG- -5'
1496 3' -58.2 NC_001335.1 + 22088 0.66 0.571018
Target:  5'- aCUGGGUCgaaggaGCAUUCgaCACGGUCACCg -3'
miRNA:   3'- -GGCCCAGg-----CGUGGGaaGUGCUGGUGG- -5'
1496 3' -58.2 NC_001335.1 + 22214 0.66 0.581528
Target:  5'- gCGGG-CCGUcuuggaGCgCgUUCAUGAUCGCCu -3'
miRNA:   3'- gGCCCaGGCG------UG-GgAAGUGCUGGUGG- -5'
1496 3' -58.2 NC_001335.1 + 22680 0.66 0.602657
Target:  5'- -aGGGUacuaCCGUGCCg---ACGGCCACCa -3'
miRNA:   3'- ggCCCA----GGCGUGGgaagUGCUGGUGG- -5'
1496 3' -58.2 NC_001335.1 + 23197 0.66 0.602657
Target:  5'- gCCaGGGcacUCCGaacucgguCACCCgagUgACGAUCACCg -3'
miRNA:   3'- -GG-CCC---AGGC--------GUGGGa--AgUGCUGGUGG- -5'
1496 3' -58.2 NC_001335.1 + 23208 0.71 0.299381
Target:  5'- gCGGuaGUUCGCACCCaUCGCGGagacgaCGCCg -3'
miRNA:   3'- gGCC--CAGGCGUGGGaAGUGCUg-----GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.