miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1496 5' -50.4 NC_001335.1 + 22600 0.66 0.943813
Target:  5'- -gGCgUGGCCGGCGGugacgACUUcGAGCGa-- -3'
miRNA:   3'- caUG-ACUGGCCGCU-----UGAA-CUUGCacc -5'
1496 5' -50.4 NC_001335.1 + 20251 0.66 0.927555
Target:  5'- -aACUGGCCGGCGAcgGCcaGGuCGaGGg -3'
miRNA:   3'- caUGACUGGCCGCU--UGaaCUuGCaCC- -5'
1496 5' -50.4 NC_001335.1 + 48295 0.66 0.920934
Target:  5'- -gGCcGGCCGGcCGAACcacacccUUG-GCGUGGg -3'
miRNA:   3'- caUGaCUGGCC-GCUUG-------AACuUGCACC- -5'
1496 5' -50.4 NC_001335.1 + 6071 0.67 0.908665
Target:  5'- -cGCUGGCCGGCuacucgcaggGAGCcaucGugGUGGg -3'
miRNA:   3'- caUGACUGGCCG----------CUUGaac-UugCACC- -5'
1496 5' -50.4 NC_001335.1 + 46309 0.67 0.908665
Target:  5'- -----cGCUGGCGGGCUgaUGAagGCGUGGc -3'
miRNA:   3'- caugacUGGCCGCUUGA--ACU--UGCACC- -5'
1496 5' -50.4 NC_001335.1 + 16402 0.67 0.893892
Target:  5'- aUGCUGACC-GCGAucacccccaaccuGCa-GAACGUGGc -3'
miRNA:   3'- cAUGACUGGcCGCU-------------UGaaCUUGCACC- -5'
1496 5' -50.4 NC_001335.1 + 38352 0.67 0.88642
Target:  5'- -gGCUGGCCGGCcgagcgGAACUaagccguucggucUGGgauuCGUGGa -3'
miRNA:   3'- caUGACUGGCCG------CUUGA-------------ACUu---GCACC- -5'
1496 5' -50.4 NC_001335.1 + 45608 0.68 0.87946
Target:  5'- -cGCUGACCGuCGAguACgaGGACGUGc -3'
miRNA:   3'- caUGACUGGCcGCU--UGaaCUUGCACc -5'
1496 5' -50.4 NC_001335.1 + 34283 0.68 0.871469
Target:  5'- uGUugUGGCCGGCGGugUgcgccGGucgGCGcGGa -3'
miRNA:   3'- -CAugACUGGCCGCUugAa----CU---UGCaCC- -5'
1496 5' -50.4 NC_001335.1 + 38756 0.68 0.845951
Target:  5'- -aGCggaGACCGGCGAggGCUucgccgccguccUGAACG-GGa -3'
miRNA:   3'- caUGa--CUGGCCGCU--UGA------------ACUUGCaCC- -5'
1496 5' -50.4 NC_001335.1 + 32071 0.68 0.845951
Target:  5'- gGUGCUGACCGaGCuGGagcgucaccgucACUUGAGCuucucgGUGGu -3'
miRNA:   3'- -CAUGACUGGC-CG-CU------------UGAACUUG------CACC- -5'
1496 5' -50.4 NC_001335.1 + 46493 0.69 0.808648
Target:  5'- ----cGACCGGCGGuagcuCUUGAGC-UGGc -3'
miRNA:   3'- caugaCUGGCCGCUu----GAACUUGcACC- -5'
1496 5' -50.4 NC_001335.1 + 11538 0.69 0.798805
Target:  5'- -cACUGgACCGGCGAcg-UGAGugcguCGUGGa -3'
miRNA:   3'- caUGAC-UGGCCGCUugaACUU-----GCACC- -5'
1496 5' -50.4 NC_001335.1 + 5319 0.71 0.714423
Target:  5'- cGUGUUGGCC-GCGAaggGCUUGGGCGUGa -3'
miRNA:   3'- -CAUGACUGGcCGCU---UGAACUUGCACc -5'
1496 5' -50.4 NC_001335.1 + 36706 0.74 0.545935
Target:  5'- -gACUGGCCGGCGGucgUGGuugcccuCGUGGa -3'
miRNA:   3'- caUGACUGGCCGCUugaACUu------GCACC- -5'
1496 5' -50.4 NC_001335.1 + 40062 0.75 0.513161
Target:  5'- -gGCgaGGCCGGUGAACUccUGGcCGUGGa -3'
miRNA:   3'- caUGa-CUGGCCGCUUGA--ACUuGCACC- -5'
1496 5' -50.4 NC_001335.1 + 32769 1.1 0.002809
Target:  5'- uGUACUGACCGGCGAACUUGAACGUGGc -3'
miRNA:   3'- -CAUGACUGGCCGCUUGAACUUGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.