miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1498 5' -49.2 NC_001335.1 + 29731 0.66 0.946895
Target:  5'- ---cUGGGAGGCAaucGCUuucaCCGAGuacGGCg -3'
miRNA:   3'- guuuAUCCUCCGU---UGA----GGCUCua-CUG- -5'
1498 5' -49.2 NC_001335.1 + 14456 0.66 0.936423
Target:  5'- ----aAGGcGGCGAgUCCGAGGUcaagGGCu -3'
miRNA:   3'- guuuaUCCuCCGUUgAGGCUCUA----CUG- -5'
1498 5' -49.2 NC_001335.1 + 30480 0.66 0.936423
Target:  5'- cCAGGUGGcuGAGGCcauCUCCuuGAUGGCc -3'
miRNA:   3'- -GUUUAUC--CUCCGuu-GAGGcuCUACUG- -5'
1498 5' -49.2 NC_001335.1 + 1368 0.66 0.936423
Target:  5'- -cGGUGGGGGGCA---CCGGGGUGu- -3'
miRNA:   3'- guUUAUCCUCCGUugaGGCUCUACug -5'
1498 5' -49.2 NC_001335.1 + 43288 0.67 0.924721
Target:  5'- uCGAGUccGGGAcuacaagaccGGCAACUCgCcGGGUGACg -3'
miRNA:   3'- -GUUUA--UCCU----------CCGUUGAG-GcUCUACUG- -5'
1498 5' -49.2 NC_001335.1 + 10901 0.67 0.911784
Target:  5'- ----cAGGAGGCuGCagCCGcucGGGUGGCg -3'
miRNA:   3'- guuuaUCCUCCGuUGa-GGC---UCUACUG- -5'
1498 5' -49.2 NC_001335.1 + 27170 0.68 0.87416
Target:  5'- ----aGGGuGGCGGCaaggCCGAuGAUGGCu -3'
miRNA:   3'- guuuaUCCuCCGUUGa---GGCU-CUACUG- -5'
1498 5' -49.2 NC_001335.1 + 51940 0.68 0.863199
Target:  5'- gGGAUAGcGGGGCGACUgucaagcgaugccaCCGAGAccagcGACa -3'
miRNA:   3'- gUUUAUC-CUCCGUUGA--------------GGCUCUa----CUG- -5'
1498 5' -49.2 NC_001335.1 + 7459 0.71 0.713335
Target:  5'- ----cAGGcAGGCGACUcugucgacaCCGGGAUGAUg -3'
miRNA:   3'- guuuaUCC-UCCGUUGA---------GGCUCUACUG- -5'
1498 5' -49.2 NC_001335.1 + 45679 0.75 0.517947
Target:  5'- cCAAcUAGGAGGaGACcgCCGAGAUGAa -3'
miRNA:   3'- -GUUuAUCCUCCgUUGa-GGCUCUACUg -5'
1498 5' -49.2 NC_001335.1 + 33664 1.09 0.003363
Target:  5'- cCAAAUAGGAGGCAACUCCGAGAUGACc -3'
miRNA:   3'- -GUUUAUCCUCCGUUGAGGCUCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.