miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14983 3' -60.1 NC_003690.1 + 3911 0.67 0.116416
Target:  5'- gCGCUGGCgauggggGCCAUcaucuucagGGCAUGCACUGCa -3'
miRNA:   3'- gGCGGUCG-------CGGUA---------CCGUGUGUGGCGg -5'
14983 3' -60.1 NC_003690.1 + 4903 0.68 0.097074
Target:  5'- cCCGgCAGgGCaCAUGaaACACACCaauGCCa -3'
miRNA:   3'- -GGCgGUCgCG-GUACcgUGUGUGG---CGG- -5'
14983 3' -60.1 NC_003690.1 + 6254 0.69 0.07566
Target:  5'- aUGCCAGgccaGCCAUGGUgugaaauCACACUgaGCCa -3'
miRNA:   3'- gGCGGUCg---CGGUACCGu------GUGUGG--CGG- -5'
14983 3' -60.1 NC_003690.1 + 4279 0.76 0.019813
Target:  5'- gCgGUguGUGCCAUGGCGCugGCgGCUu -3'
miRNA:   3'- -GgCGguCGCGGUACCGUGugUGgCGG- -5'
14983 3' -60.1 NC_003690.1 + 4314 1.12 0.000016
Target:  5'- gCCGCCAGCGCCAUGGCACACACCGCCu -3'
miRNA:   3'- -GGCGGUCGCGGUACCGUGUGUGGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.