miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14984 5' -51.9 NC_003690.1 + 9926 0.66 0.387108
Target:  5'- aCAGGCCgucuCCcgcacacuCCAGCCGc--AGCCAg -3'
miRNA:   3'- -GUUCGGau--GGu-------GGUCGGUuuuUCGGU- -5'
14984 5' -51.9 NC_003690.1 + 4046 0.66 0.38394
Target:  5'- -uGGCC-ACUACCauGGCCAuauggagauacaucAGGGGCCAg -3'
miRNA:   3'- guUCGGaUGGUGG--UCGGU--------------UUUUCGGU- -5'
14984 5' -51.9 NC_003690.1 + 7601 0.66 0.366318
Target:  5'- gGGGCCUucuGCCACuCGGCCAcAGAcuguGGCUc -3'
miRNA:   3'- gUUCGGA---UGGUG-GUCGGU-UUU----UCGGu -5'
14984 5' -51.9 NC_003690.1 + 6792 0.67 0.336604
Target:  5'- cCAGuGCC-ACC-CCAGCCAuguucccguAGCCAa -3'
miRNA:   3'- -GUU-CGGaUGGuGGUCGGUuuu------UCGGU- -5'
14984 5' -51.9 NC_003690.1 + 3230 0.67 0.327098
Target:  5'- gUAGGUUgACCuagguCCAGCCAGAcuGGCCGg -3'
miRNA:   3'- -GUUCGGaUGGu----GGUCGGUUUu-UCGGU- -5'
14984 5' -51.9 NC_003690.1 + 4209 0.67 0.327098
Target:  5'- --cGUCUcccccuggagGCCGCCAacucCCAGAAGGCCAg -3'
miRNA:   3'- guuCGGA----------UGGUGGUc---GGUUUUUCGGU- -5'
14984 5' -51.9 NC_003690.1 + 7300 0.67 0.299781
Target:  5'- --uGCCUccagucccgacACCACUauGGCCAggugGAAAGCCGc -3'
miRNA:   3'- guuCGGA-----------UGGUGG--UCGGU----UUUUCGGU- -5'
14984 5' -51.9 NC_003690.1 + 1684 0.68 0.28257
Target:  5'- cCAAGCCUcagcuCCAUCAuGCUuccaagGGAGGGCCAg -3'
miRNA:   3'- -GUUCGGAu----GGUGGU-CGG------UUUUUCGGU- -5'
14984 5' -51.9 NC_003690.1 + 6909 0.68 0.28257
Target:  5'- -cAGCC-ACCAucCCGGCCA---GGCCGc -3'
miRNA:   3'- guUCGGaUGGU--GGUCGGUuuuUCGGU- -5'
14984 5' -51.9 NC_003690.1 + 6155 0.69 0.242982
Target:  5'- gCAGGCCacUACCGCCuGCCAGAGGa--- -3'
miRNA:   3'- -GUUCGG--AUGGUGGuCGGUUUUUcggu -5'
14984 5' -51.9 NC_003690.1 + 3175 0.69 0.242982
Target:  5'- aAAGCUguuuCUACCGGCCAGucuGGCUg -3'
miRNA:   3'- gUUCGGau--GGUGGUCGGUUuu-UCGGu -5'
14984 5' -51.9 NC_003690.1 + 4520 1.08 0.000194
Target:  5'- uCAAGCCUACCACCAGCCAAAAAGCCAu -3'
miRNA:   3'- -GUUCGGAUGGUGGUCGGUUUUUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.