miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1499 3' -54.2 NC_001335.1 + 51788 0.66 0.802429
Target:  5'- aCUAcGUGCccggUAUCGGCGUugUCGUGCCg -3'
miRNA:   3'- gGGU-CACGua--GUAGCUGUA--GGCGCGG- -5'
1499 3' -54.2 NC_001335.1 + 32168 0.66 0.802429
Target:  5'- aCUCGGccaGC-UCGUCGGCAUCgaaGuCGCCg -3'
miRNA:   3'- -GGGUCa--CGuAGUAGCUGUAGg--C-GCGG- -5'
1499 3' -54.2 NC_001335.1 + 8944 0.66 0.802429
Target:  5'- gCCGaUGgAgacCAUCGGCugguUCCGCGCUg -3'
miRNA:   3'- gGGUcACgUa--GUAGCUGu---AGGCGCGG- -5'
1499 3' -54.2 NC_001335.1 + 7557 0.66 0.79664
Target:  5'- uUCCAGcGCGUCguacaucaucccgguGUCGACAgagUCGCcuGCCu -3'
miRNA:   3'- -GGGUCaCGUAG---------------UAGCUGUa--GGCG--CGG- -5'
1499 3' -54.2 NC_001335.1 + 47977 0.66 0.782893
Target:  5'- aCCAGggagGCGUgAcCGGCAaguUCUGgGCCa -3'
miRNA:   3'- gGGUCa---CGUAgUaGCUGU---AGGCgCGG- -5'
1499 3' -54.2 NC_001335.1 + 43913 0.66 0.782893
Target:  5'- gCUCAGUGUcgCuGUCGACGgg-GCGCUg -3'
miRNA:   3'- -GGGUCACGuaG-UAGCUGUaggCGCGG- -5'
1499 3' -54.2 NC_001335.1 + 1530 0.66 0.772885
Target:  5'- aCCUugaugGCGUCGUgGugAUCCGgGUCc -3'
miRNA:   3'- -GGGuca--CGUAGUAgCugUAGGCgCGG- -5'
1499 3' -54.2 NC_001335.1 + 45509 0.66 0.771876
Target:  5'- aCCAGUGgAagAcgUGGCAUgacgagcCCGCGCCg -3'
miRNA:   3'- gGGUCACgUagUa-GCUGUA-------GGCGCGG- -5'
1499 3' -54.2 NC_001335.1 + 26690 0.66 0.76273
Target:  5'- uCUCGGggGCAUCAgcgCGGuCcUCCGUGCUu -3'
miRNA:   3'- -GGGUCa-CGUAGUa--GCU-GuAGGCGCGG- -5'
1499 3' -54.2 NC_001335.1 + 19104 0.66 0.76273
Target:  5'- gCgAGaacUGCGUCAUCGACAccgaCCgGCGCg -3'
miRNA:   3'- gGgUC---ACGUAGUAGCUGUa---GG-CGCGg -5'
1499 3' -54.2 NC_001335.1 + 47982 0.67 0.74203
Target:  5'- -aCGGUGCA--GUCGACA-CCaGCGCa -3'
miRNA:   3'- ggGUCACGUagUAGCUGUaGG-CGCGg -5'
1499 3' -54.2 NC_001335.1 + 29327 0.67 0.74203
Target:  5'- aUCCAGUcCGaCGaCGGCAgcgUCUGCGCCg -3'
miRNA:   3'- -GGGUCAcGUaGUaGCUGU---AGGCGCGG- -5'
1499 3' -54.2 NC_001335.1 + 34291 0.67 0.731507
Target:  5'- gCUCAGUGUGUUGUggcCGGCGgUgUGCGCCg -3'
miRNA:   3'- -GGGUCACGUAGUA---GCUGU-AgGCGCGG- -5'
1499 3' -54.2 NC_001335.1 + 15650 0.67 0.720885
Target:  5'- gCCUGGaugGCGUCGUaGAUGUCCGCGa- -3'
miRNA:   3'- -GGGUCa--CGUAGUAgCUGUAGGCGCgg -5'
1499 3' -54.2 NC_001335.1 + 5369 0.67 0.710174
Target:  5'- uUCGGUGCAgcUCAcCGAgAUCgccugcgcgagCGCGCCg -3'
miRNA:   3'- gGGUCACGU--AGUaGCUgUAG-----------GCGCGG- -5'
1499 3' -54.2 NC_001335.1 + 13603 0.67 0.699387
Target:  5'- uCUCGGacgGCGUCccucgucUCGACGUaCCGgGCCg -3'
miRNA:   3'- -GGGUCa--CGUAGu------AGCUGUA-GGCgCGG- -5'
1499 3' -54.2 NC_001335.1 + 6496 0.67 0.699387
Target:  5'- gCCAGaGcCAUCAUCGACGcccucacguUCUuCGCCa -3'
miRNA:   3'- gGGUCaC-GUAGUAGCUGU---------AGGcGCGG- -5'
1499 3' -54.2 NC_001335.1 + 14195 0.68 0.688533
Target:  5'- aUCCAGgGUcugAUCAggcUCGGCGUCCGCaGaCCg -3'
miRNA:   3'- -GGGUCaCG---UAGU---AGCUGUAGGCG-C-GG- -5'
1499 3' -54.2 NC_001335.1 + 4604 0.68 0.677626
Target:  5'- gCgCAGUGgGUCcaCGACAUggcCCGCGCUc -3'
miRNA:   3'- -GgGUCACgUAGuaGCUGUA---GGCGCGG- -5'
1499 3' -54.2 NC_001335.1 + 8590 0.68 0.677626
Target:  5'- cCCCAG-GCucuaCGUCGACucaGUCgccgaGCGCCa -3'
miRNA:   3'- -GGGUCaCGua--GUAGCUG---UAGg----CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.