miRNA display CGI


Results 21 - 40 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1499 5' -56.6 NC_001335.1 + 22980 0.67 0.562858
Target:  5'- cACGCCGUCGGUgAUgccGACGguCgGAGCg -3'
miRNA:   3'- -UGUGGCGGCCGgUG---UUGUguGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 32929 0.67 0.561777
Target:  5'- cGCGCCGUCGGCgACggUgacgacggccucgGCuGCUGuGCg -3'
miRNA:   3'- -UGUGGCGGCCGgUGuuG-------------UG-UGACuCG- -5'
1499 5' -56.6 NC_001335.1 + 48295 0.67 0.552076
Target:  5'- -gGCCgGCCGGCCGaacCACACccuuggcgUGGGCc -3'
miRNA:   3'- ugUGG-CGGCCGGUguuGUGUG--------ACUCG- -5'
1499 5' -56.6 NC_001335.1 + 26069 0.67 0.552076
Target:  5'- cACGuuGCCGGCCACcGAUACGac-GGUg -3'
miRNA:   3'- -UGUggCGGCCGGUG-UUGUGUgacUCG- -5'
1499 5' -56.6 NC_001335.1 + 46343 0.67 0.548853
Target:  5'- uCAgCGCgaCGGCCGCAACGCggcgaugaaccaccGCUG-GCg -3'
miRNA:   3'- uGUgGCG--GCCGGUGUUGUG--------------UGACuCG- -5'
1499 5' -56.6 NC_001335.1 + 5990 0.67 0.545636
Target:  5'- -gGCCGUCGGUCGaaaaggguguCGCUGAGCu -3'
miRNA:   3'- ugUGGCGGCCGGUguugu-----GUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 4158 0.67 0.541356
Target:  5'- uCGCCGCCGGCUGCcuCGC-CggucGGCa -3'
miRNA:   3'- uGUGGCGGCCGGUGuuGUGuGac--UCG- -5'
1499 5' -56.6 NC_001335.1 + 22585 0.67 0.541356
Target:  5'- -uGgUGCCGGCCAgcucgcCGAUACGCUcGGCg -3'
miRNA:   3'- ugUgGCGGCCGGU------GUUGUGUGAcUCG- -5'
1499 5' -56.6 NC_001335.1 + 23045 0.67 0.530707
Target:  5'- -gACCGCCGG-CACGGCcaACgguGCUGAGa -3'
miRNA:   3'- ugUGGCGGCCgGUGUUG--UG---UGACUCg -5'
1499 5' -56.6 NC_001335.1 + 36771 0.67 0.527528
Target:  5'- -gACCGCCGGCCAguCGACuAC-CUGcaccaguucgccccGGCg -3'
miRNA:   3'- ugUGGCGGCCGGU--GUUG-UGuGAC--------------UCG- -5'
1499 5' -56.6 NC_001335.1 + 3174 0.68 0.520136
Target:  5'- cCGCCGCUcGCCuugGCGAgGCGCugcuUGAGCa -3'
miRNA:   3'- uGUGGCGGcCGG---UGUUgUGUG----ACUCG- -5'
1499 5' -56.6 NC_001335.1 + 28949 0.68 0.520136
Target:  5'- -aGCCGCCGGCC-CAuCGCGUUGAc- -3'
miRNA:   3'- ugUGGCGGCCGGuGUuGUGUGACUcg -5'
1499 5' -56.6 NC_001335.1 + 44955 0.68 0.509647
Target:  5'- gACGCCG-UGGCCGuCucC-CACUGGGCg -3'
miRNA:   3'- -UGUGGCgGCCGGU-GuuGuGUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 13455 0.68 0.509647
Target:  5'- cCACCGCUGGUCuCGcCACucgaucugggACUGGGCc -3'
miRNA:   3'- uGUGGCGGCCGGuGUuGUG----------UGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 32999 0.68 0.509647
Target:  5'- gACACCGUCuucgacggcuuuGGCCGCAGCAgauucgUACUGcuGCu -3'
miRNA:   3'- -UGUGGCGG------------CCGGUGUUGU------GUGACu-CG- -5'
1499 5' -56.6 NC_001335.1 + 19443 0.68 0.509647
Target:  5'- cCGCCuGCgCGGCCugGucGCugGC-GAGCg -3'
miRNA:   3'- uGUGG-CG-GCCGGugU--UGugUGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 32551 0.68 0.509647
Target:  5'- gUACCGCUucucGCCACcaGGCGCuucCUGAGCu -3'
miRNA:   3'- uGUGGCGGc---CGGUG--UUGUGu--GACUCG- -5'
1499 5' -56.6 NC_001335.1 + 16929 0.68 0.499249
Target:  5'- gGCGCucaCGCCGGCCuucCAgacGCugGC-GAGCa -3'
miRNA:   3'- -UGUG---GCGGCCGGu--GU---UGugUGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 32963 0.68 0.499249
Target:  5'- -aGCCcgaGCCGGCCcCGGCuC-CUGAGCc -3'
miRNA:   3'- ugUGG---CGGCCGGuGUUGuGuGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 36789 0.68 0.499249
Target:  5'- uGCACUGCUcggagucgGGCUugAuC-CGCUGAGCg -3'
miRNA:   3'- -UGUGGCGG--------CCGGugUuGuGUGACUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.