miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1501 5' -49.4 NC_001335.1 + 16994 0.66 0.961944
Target:  5'- gCCGGCGUGaG-CGCCGuGaCGAUggGAg -3'
miRNA:   3'- -GGUUGUAUaCaGCGGC-CaGCUGuuCU- -5'
1501 5' -49.4 NC_001335.1 + 2286 0.66 0.961558
Target:  5'- gCCAGCGag-GucgaggcugaacuUCGCCgcgaGGUCGGCAAGGa -3'
miRNA:   3'- -GGUUGUauaC-------------AGCGG----CCAGCUGUUCU- -5'
1501 5' -49.4 NC_001335.1 + 7033 0.66 0.957959
Target:  5'- gCCGACg---GUaacCCGGUCGGCAAGc -3'
miRNA:   3'- -GGUUGuauaCAgc-GGCCAGCUGUUCu -5'
1501 5' -49.4 NC_001335.1 + 14058 0.67 0.949154
Target:  5'- gCAGCGUGUGcagCGUCGGUgCGuuGGGGu -3'
miRNA:   3'- gGUUGUAUACa--GCGGCCA-GCugUUCU- -5'
1501 5' -49.4 NC_001335.1 + 11473 0.67 0.944323
Target:  5'- uCgAACAUcgaGUCGCCGGUCuGCGcGAc -3'
miRNA:   3'- -GgUUGUAua-CAGCGGCCAGcUGUuCU- -5'
1501 5' -49.4 NC_001335.1 + 36055 0.67 0.944323
Target:  5'- aCAGCuugcugAUGUCGUCGGUCaaGGCAu-- -3'
miRNA:   3'- gGUUGua----UACAGCGGCCAG--CUGUucu -5'
1501 5' -49.4 NC_001335.1 + 50120 0.67 0.933787
Target:  5'- uCCGAgAUG-GUCGCCGaGuUCGuCAAGGa -3'
miRNA:   3'- -GGUUgUAUaCAGCGGC-C-AGCuGUUCU- -5'
1501 5' -49.4 NC_001335.1 + 21230 0.67 0.933787
Target:  5'- -uGACGUGcUGUCGCgGGUCGuucGGAu -3'
miRNA:   3'- ggUUGUAU-ACAGCGgCCAGCuguUCU- -5'
1501 5' -49.4 NC_001335.1 + 25548 0.68 0.922073
Target:  5'- aCCA-CAUAUGg-GCCGGUCaaGAUAGGu -3'
miRNA:   3'- -GGUuGUAUACagCGGCCAG--CUGUUCu -5'
1501 5' -49.4 NC_001335.1 + 11616 0.68 0.909177
Target:  5'- aCGACGcacucacGUCGCCGGUCcaguGCGGGAu -3'
miRNA:   3'- gGUUGUaua----CAGCGGCCAGc---UGUUCU- -5'
1501 5' -49.4 NC_001335.1 + 29868 0.7 0.846316
Target:  5'- cCCGACGUGagucgGUCGCUGGUgcCGuACGAGc -3'
miRNA:   3'- -GGUUGUAUa----CAGCGGCCA--GC-UGUUCu -5'
1501 5' -49.4 NC_001335.1 + 37899 0.71 0.788925
Target:  5'- aCCGGCGUc-GUCGCCG-UCGGcCAGGAg -3'
miRNA:   3'- -GGUUGUAuaCAGCGGCcAGCU-GUUCU- -5'
1501 5' -49.4 NC_001335.1 + 49009 0.72 0.747024
Target:  5'- gCCAGCGuUGUGacgaGCCGGUCGAUgcGGu -3'
miRNA:   3'- -GGUUGU-AUACag--CGGCCAGCUGuuCU- -5'
1501 5' -49.4 NC_001335.1 + 4153 0.75 0.578578
Target:  5'- gCCGGCugcc-UCGCCGGUCGGCAuguGAa -3'
miRNA:   3'- -GGUUGuauacAGCGGCCAGCUGUu--CU- -5'
1501 5' -49.4 NC_001335.1 + 33895 0.78 0.419154
Target:  5'- gCGGCGUucGUGaCGCCGGcCGGCAAGAc -3'
miRNA:   3'- gGUUGUA--UACaGCGGCCaGCUGUUCU- -5'
1501 5' -49.4 NC_001335.1 + 34276 0.8 0.296921
Target:  5'- gCCGGCgGUGUG-CGCCGGUCGGCGcGGAu -3'
miRNA:   3'- -GGUUG-UAUACaGCGGCCAGCUGU-UCU- -5'
1501 5' -49.4 NC_001335.1 + 34850 1.12 0.002819
Target:  5'- uCCAACAUAUGUCGCCGGUCGACAAGAg -3'
miRNA:   3'- -GGUUGUAUACAGCGGCCAGCUGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.