miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1503 3' -55.7 NC_001335.1 + 24934 0.66 0.64324
Target:  5'- cUGAUCGCagaGAaccCGUGCCGGAUCgaGCAg -3'
miRNA:   3'- uACUAGUGg--CU---GCACGGCUUGG--CGUa -5'
1503 3' -55.7 NC_001335.1 + 26681 0.66 0.62092
Target:  5'- --cAUCGCCGACG-GCCGGcucaagGCCGUu- -3'
miRNA:   3'- uacUAGUGGCUGCaCGGCU------UGGCGua -5'
1503 3' -55.7 NC_001335.1 + 16470 0.67 0.598641
Target:  5'- gGUGAUCGCgGucagcauCGgGCCGAGCUGCu- -3'
miRNA:   3'- -UACUAGUGgCu------GCaCGGCUUGGCGua -5'
1503 3' -55.7 NC_001335.1 + 13020 0.67 0.587541
Target:  5'- cUGAUCcuCCGGUGUGCCGGugCGUc- -3'
miRNA:   3'- uACUAGu-GGCUGCACGGCUugGCGua -5'
1503 3' -55.7 NC_001335.1 + 32043 0.67 0.587541
Target:  5'- --cGUCGCCGagGCGUGCuCGAACaCGCu- -3'
miRNA:   3'- uacUAGUGGC--UGCACG-GCUUG-GCGua -5'
1503 3' -55.7 NC_001335.1 + 5302 0.67 0.565465
Target:  5'- gGUGAgcugCACCGAauCGUGuuG-GCCGCGa -3'
miRNA:   3'- -UACUa---GUGGCU--GCACggCuUGGCGUa -5'
1503 3' -55.7 NC_001335.1 + 42331 0.67 0.554505
Target:  5'- cGUGaAUCgGCCGAcCG-GCgCGAGCCGCGUg -3'
miRNA:   3'- -UAC-UAG-UGGCU-GCaCG-GCUUGGCGUA- -5'
1503 3' -55.7 NC_001335.1 + 12909 0.67 0.554505
Target:  5'- gGUGAU-GCCGACGUGagcgcgagcgaCCGAcACCGCGc -3'
miRNA:   3'- -UACUAgUGGCUGCAC-----------GGCU-UGGCGUa -5'
1503 3' -55.7 NC_001335.1 + 16466 0.68 0.531707
Target:  5'- -cGAUCACCGACGUGaucacccaggcucCUGGuCUGCAg -3'
miRNA:   3'- uaCUAGUGGCUGCAC-------------GGCUuGGCGUa -5'
1503 3' -55.7 NC_001335.1 + 31145 0.69 0.479964
Target:  5'- cUGAg-ACCGGCccgagccgGCCGAACCGCAa -3'
miRNA:   3'- uACUagUGGCUGca------CGGCUUGGCGUa -5'
1503 3' -55.7 NC_001335.1 + 51206 0.7 0.410657
Target:  5'- aAUGAUCGCUGAgcuaUG-GCUGAGCCGUAg -3'
miRNA:   3'- -UACUAGUGGCU----GCaCGGCUUGGCGUa -5'
1503 3' -55.7 NC_001335.1 + 8258 0.71 0.359899
Target:  5'- -gGAUUGCCGuCGUGCCagaccucgcccucaaGGACCGCGUc -3'
miRNA:   3'- uaCUAGUGGCuGCACGG---------------CUUGGCGUA- -5'
1503 3' -55.7 NC_001335.1 + 21350 0.71 0.356445
Target:  5'- -gGAgcCAgUCGACGUGCCGAaaGCCGCAc -3'
miRNA:   3'- uaCUa-GU-GGCUGCACGGCU--UGGCGUa -5'
1503 3' -55.7 NC_001335.1 + 20976 0.71 0.356445
Target:  5'- -cGAggACCGACGUGCCGA--CGCGa -3'
miRNA:   3'- uaCUagUGGCUGCACGGCUugGCGUa -5'
1503 3' -55.7 NC_001335.1 + 14377 0.76 0.176088
Target:  5'- cUGcgCACCGACGUacacguaGCCGAccGCCGCAg -3'
miRNA:   3'- uACuaGUGGCUGCA-------CGGCU--UGGCGUa -5'
1503 3' -55.7 NC_001335.1 + 36478 1.03 0.001871
Target:  5'- gAUGAUCACCGACGUGCCGAACCGCAUc -3'
miRNA:   3'- -UACUAGUGGCUGCACGGCUUGGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.