Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1505 | 3' | -53.8 | NC_001335.1 | + | 1770 | 0.66 | 0.821251 |
Target: 5'- cCGAgGCCGGcuGUCGgAGC-GCCGUUg -3' miRNA: 3'- cGCUaUGGCC--UAGCgUCGaUGGCAGg -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 3579 | 0.69 | 0.644688 |
Target: 5'- aGCGAgACCGGAUgcaCGaCAGCguuuCCGgcUCCg -3' miRNA: 3'- -CGCUaUGGCCUA---GC-GUCGau--GGC--AGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 10324 | 0.68 | 0.687445 |
Target: 5'- uGCGggGCCGGAUCGUucuugacAGC-GCCGa-- -3' miRNA: 3'- -CGCuaUGGCCUAGCG-------UCGaUGGCagg -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 11205 | 0.67 | 0.730449 |
Target: 5'- uGCGuucgACCcgucucaGGGUCGCGGCgguaaGCCG-CCg -3' miRNA: 3'- -CGCua--UGG-------CCUAGCGUCGa----UGGCaGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 11818 | 0.7 | 0.589688 |
Target: 5'- uCGGUGCCGuuGAUCGCGGC-GuuGUCg -3' miRNA: 3'- cGCUAUGGC--CUAGCGUCGaUggCAGg -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 13279 | 0.66 | 0.811935 |
Target: 5'- cGgGAUGCCGGuauUCGaCGGCc-UgGUCCg -3' miRNA: 3'- -CgCUAUGGCCu--AGC-GUCGauGgCAGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 17770 | 0.71 | 0.54627 |
Target: 5'- uCGAacggGCCaaGGAucUCGCGGCUgaGCUGUCCa -3' miRNA: 3'- cGCUa---UGG--CCU--AGCGUCGA--UGGCAGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 19289 | 0.67 | 0.76273 |
Target: 5'- aCGAgGCCGuGGUCGC-GCUGCUGggggCUa -3' miRNA: 3'- cGCUaUGGC-CUAGCGuCGAUGGCa---GG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 19343 | 0.66 | 0.792745 |
Target: 5'- cGUGA-GCCGGAggGUAaCUACCuGUCCc -3' miRNA: 3'- -CGCUaUGGCCUagCGUcGAUGG-CAGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 21546 | 0.68 | 0.720885 |
Target: 5'- aGCGAUaGCCGaGGUCGUggAGUgaccCCGUUCa -3' miRNA: 3'- -CGCUA-UGGC-CUAGCG--UCGau--GGCAGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 22480 | 0.69 | 0.633671 |
Target: 5'- -gGAUGCCGGuagcugcauUCGaGGCUGCgGUCUg -3' miRNA: 3'- cgCUAUGGCCu--------AGCgUCGAUGgCAGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 23019 | 0.66 | 0.782893 |
Target: 5'- uGgGGUGCUGGAUCGaucuucGCUcugACCG-CCg -3' miRNA: 3'- -CgCUAUGGCCUAGCgu----CGA---UGGCaGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 24130 | 0.66 | 0.821251 |
Target: 5'- gGCGGUGCUGGcgcUCGCGGCcagGCgugGUUCu -3' miRNA: 3'- -CGCUAUGGCCu--AGCGUCGa--UGg--CAGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 24831 | 0.74 | 0.360658 |
Target: 5'- uCGAgcacUACCGGAUCGCGGCaUACa-UCCu -3' miRNA: 3'- cGCU----AUGGCCUAGCGUCG-AUGgcAGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 25960 | 0.7 | 0.600653 |
Target: 5'- uUGGUACgCGuGGUCGCuGCUGaucCUGUCCa -3' miRNA: 3'- cGCUAUG-GC-CUAGCGuCGAU---GGCAGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 29424 | 0.69 | 0.611644 |
Target: 5'- uCGAUcACCGGcaucccggCGCAgacGCUGCCGUCg -3' miRNA: 3'- cGCUA-UGGCCua------GCGU---CGAUGGCAGg -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 34237 | 0.7 | 0.589688 |
Target: 5'- aGCGAUGgCGuGGucgaccuccaUCGCGGCgaUGCCGUCg -3' miRNA: 3'- -CGCUAUgGC-CU----------AGCGUCG--AUGGCAGg -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 35414 | 0.68 | 0.720885 |
Target: 5'- cGgGAUGcCCGGuUCGgAGCUguACCGggCCg -3' miRNA: 3'- -CgCUAU-GGCCuAGCgUCGA--UGGCa-GG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 35912 | 0.68 | 0.710174 |
Target: 5'- cGCGAcuuguuCCaGGAgCGCAGCcacUACuCGUCCg -3' miRNA: 3'- -CGCUau----GG-CCUaGCGUCG---AUG-GCAGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 38149 | 1.15 | 0.000633 |
Target: 5'- gGCGAUACCGGAUCGCAGCUACCGUCCa -3' miRNA: 3'- -CGCUAUGGCCUAGCGUCGAUGGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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