Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1505 | 3' | -53.8 | NC_001335.1 | + | 39057 | 0.69 | 0.610544 |
Target: 5'- -gGAU-CCGGGUCuccCAGCUcguagagcugcgaGCCGUCCu -3' miRNA: 3'- cgCUAuGGCCUAGc--GUCGA-------------UGGCAGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 42094 | 0.69 | 0.610544 |
Target: 5'- -aGGUugCGGAUCuccaucaGCcGCUugUGUCCg -3' miRNA: 3'- cgCUAugGCCUAG-------CGuCGAugGCAGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 25960 | 0.7 | 0.600653 |
Target: 5'- uUGGUACgCGuGGUCGCuGCUGaucCUGUCCa -3' miRNA: 3'- cGCUAUG-GC-CUAGCGuCGAU---GGCAGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 11818 | 0.7 | 0.589688 |
Target: 5'- uCGGUGCCGuuGAUCGCGGC-GuuGUCg -3' miRNA: 3'- cGCUAUGGC--CUAGCGUCGaUggCAGg -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 34237 | 0.7 | 0.589688 |
Target: 5'- aGCGAUGgCGuGGucgaccuccaUCGCGGCgaUGCCGUCg -3' miRNA: 3'- -CGCUAUgGC-CU----------AGCGUCG--AUGGCAGg -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 17770 | 0.71 | 0.54627 |
Target: 5'- uCGAacggGCCaaGGAucUCGCGGCUgaGCUGUCCa -3' miRNA: 3'- cGCUa---UGG--CCU--AGCGUCGA--UGGCAGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 43264 | 0.71 | 0.524935 |
Target: 5'- uCGAUGaacccUCGGA-CGCGGaUGCCGUCCa -3' miRNA: 3'- cGCUAU-----GGCCUaGCGUCgAUGGCAGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 46203 | 0.71 | 0.524935 |
Target: 5'- uGUGAgUACCGGAgCGCAGCgcacAUCG-CCg -3' miRNA: 3'- -CGCU-AUGGCCUaGCGUCGa---UGGCaGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 50791 | 0.71 | 0.493555 |
Target: 5'- cGCGGUGCCuuacGGAUgGCGGUgccUACCGUg- -3' miRNA: 3'- -CGCUAUGG----CCUAgCGUCG---AUGGCAgg -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 48902 | 0.72 | 0.483285 |
Target: 5'- aGCGGgcugACCGGAga--AGCUACCGcgUCCg -3' miRNA: 3'- -CGCUa---UGGCCUagcgUCGAUGGC--AGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 41813 | 0.74 | 0.378071 |
Target: 5'- aGCGGcacCCGGAUaCG-AGCUGCCGUCg -3' miRNA: 3'- -CGCUau-GGCCUA-GCgUCGAUGGCAGg -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 24831 | 0.74 | 0.360658 |
Target: 5'- uCGAgcacUACCGGAUCGCGGCaUACa-UCCu -3' miRNA: 3'- cGCU----AUGGCCUAGCGUCG-AUGgcAGG- -5' |
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1505 | 3' | -53.8 | NC_001335.1 | + | 38149 | 1.15 | 0.000633 |
Target: 5'- gGCGAUACCGGAUCGCAGCUACCGUCCa -3' miRNA: 3'- -CGCUAUGGCCUAGCGUCGAUGGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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