miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1505 5' -54.5 NC_001335.1 + 21215 0.66 0.735752
Target:  5'- uCGGGGCGAUCA-CGCAUccggguuaccugGCGGAu- -3'
miRNA:   3'- -GUCCCGCUGGUgGCGUAua----------UGCCUua -5'
1505 5' -54.5 NC_001335.1 + 7887 0.66 0.729298
Target:  5'- gAGGGUGAuccggUCACCGCGcugcaGCGGAGc -3'
miRNA:   3'- gUCCCGCU-----GGUGGCGUaua--UGCCUUa -5'
1505 5' -54.5 NC_001335.1 + 7216 0.66 0.718463
Target:  5'- gAGGcaGCGACCucgagccCCGCGUcgAUGGAGg -3'
miRNA:   3'- gUCC--CGCUGGu------GGCGUAuaUGCCUUa -5'
1505 5' -54.5 NC_001335.1 + 17217 0.66 0.696539
Target:  5'- gAGGGCcgucGCCAgCGCcgggAUGUGCGGGGc -3'
miRNA:   3'- gUCCCGc---UGGUgGCG----UAUAUGCCUUa -5'
1505 5' -54.5 NC_001335.1 + 29289 0.66 0.683254
Target:  5'- -cGGGCGACCGCaacaugaucgagGCAUucgagaacgGUGCGGAc- -3'
miRNA:   3'- guCCCGCUGGUGg-----------CGUA---------UAUGCCUua -5'
1505 5' -54.5 NC_001335.1 + 15376 0.67 0.648645
Target:  5'- cCAGGGUugaguACCGCUGCAUAcagcucugcgcggaUACGGGGa -3'
miRNA:   3'- -GUCCCGc----UGGUGGCGUAU--------------AUGCCUUa -5'
1505 5' -54.5 NC_001335.1 + 43184 0.67 0.629581
Target:  5'- -cGGGCGACUACUuCAUG-GCGGGGa -3'
miRNA:   3'- guCCCGCUGGUGGcGUAUaUGCCUUa -5'
1505 5' -54.5 NC_001335.1 + 50326 0.68 0.618366
Target:  5'- aAGGGCGgcaacGCCACCGUAgGUACGc--- -3'
miRNA:   3'- gUCCCGC-----UGGUGGCGUaUAUGCcuua -5'
1505 5' -54.5 NC_001335.1 + 38535 0.68 0.562672
Target:  5'- aCAGGGCuACaACUGCAUGgccUGCGGggUc -3'
miRNA:   3'- -GUCCCGcUGgUGGCGUAU---AUGCCuuA- -5'
1505 5' -54.5 NC_001335.1 + 38277 0.69 0.519103
Target:  5'- cCGGGGCuGCCuggcgauuCCGUAUAUGCGGu-- -3'
miRNA:   3'- -GUCCCGcUGGu-------GGCGUAUAUGCCuua -5'
1505 5' -54.5 NC_001335.1 + 17576 0.71 0.44644
Target:  5'- cCAGGGCcuGAUCaACgGCAUcgGCGGGAUg -3'
miRNA:   3'- -GUCCCG--CUGG-UGgCGUAuaUGCCUUA- -5'
1505 5' -54.5 NC_001335.1 + 38183 1.05 0.001913
Target:  5'- cCAGGGCGACCACCGCAUAUACGGAAUc -3'
miRNA:   3'- -GUCCCGCUGGUGGCGUAUAUGCCUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.