Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1506 | 3' | -55.2 | NC_001335.1 | + | 12184 | 0.69 | 0.5384 |
Target: 5'- -aCCugGc--CCCAGA-CGAGCUGGCg -3' miRNA: 3'- caGGugCuuaGGGUCUgGCUUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 39790 | 0.69 | 0.527802 |
Target: 5'- -gCCaACGcuUCCCAGACCGugGugCGGUc -3' miRNA: 3'- caGG-UGCuuAGGGUCUGGC--UugGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 3329 | 0.69 | 0.5384 |
Target: 5'- gGUCCAgCGGaaGUCCCGGcCUGuGACCaGGCa -3' miRNA: 3'- -CAGGU-GCU--UAGGGUCuGGC-UUGG-CCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 20233 | 0.69 | 0.567355 |
Target: 5'- uGUCCuCGAuGUCCCAGACCacgcagccgucccgGAGCgGGa -3' miRNA: 3'- -CAGGuGCU-UAGGGUCUGG--------------CUUGgCCg -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 1027 | 0.7 | 0.506847 |
Target: 5'- gGUCCGCGAAUaCCC-GACCu-ACUGGg -3' miRNA: 3'- -CAGGUGCUUA-GGGuCUGGcuUGGCCg -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 23016 | 0.7 | 0.463078 |
Target: 5'- -aCCugGggUgCUGGAUCGAucuucgcucugaccGCCGGCa -3' miRNA: 3'- caGGugCuuAgGGUCUGGCU--------------UGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 31734 | 0.71 | 0.446325 |
Target: 5'- -gCCGCGGAUgCCgAGAUCcguGAGCUGGCa -3' miRNA: 3'- caGGUGCUUA-GGgUCUGG---CUUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 49111 | 0.71 | 0.45614 |
Target: 5'- gGUCUACaAGUUCCacgaGGACCGcaucGACCGGCu -3' miRNA: 3'- -CAGGUGcUUAGGG----UCUGGC----UUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 28928 | 0.71 | 0.43663 |
Target: 5'- uGUCCGCGAgcuGUCaCCGGcaGCC--GCCGGCc -3' miRNA: 3'- -CAGGUGCU---UAG-GGUC--UGGcuUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 47259 | 0.72 | 0.399102 |
Target: 5'- cUCC-CGAGUUcgggCCAGACCGcgUCGGCu -3' miRNA: 3'- cAGGuGCUUAG----GGUCUGGCuuGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 38366 | 0.72 | 0.390047 |
Target: 5'- uUUgGCGAGUCgCGGGCUG-GCCGGCc -3' miRNA: 3'- cAGgUGCUUAGgGUCUGGCuUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 623 | 0.72 | 0.380244 |
Target: 5'- --aCGCGGcauAUUCCAGGCCGcgagauaGGCCGGCa -3' miRNA: 3'- cagGUGCU---UAGGGUCUGGC-------UUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 11515 | 0.72 | 0.363703 |
Target: 5'- --gCACGAccggccagaagAUCCCGcACUGGACCGGCg -3' miRNA: 3'- cagGUGCU-----------UAGGGUcUGGCUUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 27449 | 0.73 | 0.355199 |
Target: 5'- gGUCugCACGGugccAUCCCAGAuCUGAuccGCCGGCu -3' miRNA: 3'- -CAG--GUGCU----UAGGGUCU-GGCU---UGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 40655 | 0.73 | 0.338617 |
Target: 5'- --aCGCGGAgaggCCCAGgaucGCCGAuCCGGCg -3' miRNA: 3'- cagGUGCUUa---GGGUC----UGGCUuGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 36790 | 0.73 | 0.338617 |
Target: 5'- uGUCCACGAGggcaaCCAcGACC--GCCGGCc -3' miRNA: 3'- -CAGGUGCUUag---GGU-CUGGcuUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 34887 | 0.75 | 0.238438 |
Target: 5'- cGUCCACGA--CCCucucGACCGuuuCCGGCc -3' miRNA: 3'- -CAGGUGCUuaGGGu---CUGGCuu-GGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 32976 | 0.76 | 0.20917 |
Target: 5'- -aCCGCcccugCCCAGcCCGAGCCGGCc -3' miRNA: 3'- caGGUGcuua-GGGUCuGGCUUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 38251 | 1.12 | 0.000702 |
Target: 5'- cGUCCACGAAUCCCAGACCGAACCGGCu -3' miRNA: 3'- -CAGGUGCUUAGGGUCUGGCUUGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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