miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1506 3' -55.2 NC_001335.1 + 35318 0.67 0.690668
Target:  5'- cUCCGgGAAcaccucggCCCGGuacagcuCCGAACCGGg -3'
miRNA:   3'- cAGGUgCUUa-------GGGUCu------GGCUUGGCCg -5'
1506 3' -55.2 NC_001335.1 + 36230 0.66 0.7407
Target:  5'- uUCUA-GAccUCCCAGACUcggccgucgaccgaGAACCGGCc -3'
miRNA:   3'- cAGGUgCUu-AGGGUCUGG--------------CUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 36790 0.73 0.338617
Target:  5'- uGUCCACGAGggcaaCCAcGACC--GCCGGCc -3'
miRNA:   3'- -CAGGUGCUUag---GGU-CUGGcuUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 38251 1.12 0.000702
Target:  5'- cGUCCACGAAUCCCAGACCGAACCGGCu -3'
miRNA:   3'- -CAGGUGCUUAGGGUCUGGCUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 38366 0.72 0.390047
Target:  5'- uUUgGCGAGUCgCGGGCUG-GCCGGCc -3'
miRNA:   3'- cAGgUGCUUAGgGUCUGGCuUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 39790 0.69 0.527802
Target:  5'- -gCCaACGcuUCCCAGACCGugGugCGGUc -3'
miRNA:   3'- caGG-UGCuuAGGGUCUGGC--UugGCCG- -5'
1506 3' -55.2 NC_001335.1 + 40031 0.66 0.743824
Target:  5'- cGUCCACGAauGUCCCu--UCGggUacaagcaGGCg -3'
miRNA:   3'- -CAGGUGCU--UAGGGucuGGCuuGg------CCG- -5'
1506 3' -55.2 NC_001335.1 + 40655 0.73 0.338617
Target:  5'- --aCGCGGAgaggCCCAGgaucGCCGAuCCGGCg -3'
miRNA:   3'- cagGUGCUUa---GGGUC----UGGCUuGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 41397 0.67 0.636106
Target:  5'- ---gACGAAcgccgacuUCCCGGuGCCgGGGCCGGCg -3'
miRNA:   3'- caggUGCUU--------AGGGUC-UGG-CUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 42341 0.68 0.603243
Target:  5'- cUCUACGA---CCAGAUCGucgcaaucucGACCGGCa -3'
miRNA:   3'- cAGGUGCUuagGGUCUGGC----------UUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 43291 0.69 0.570598
Target:  5'- -gCUuCGAGUCCgGGACUacaaGACCGGCa -3'
miRNA:   3'- caGGuGCUUAGGgUCUGGc---UUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 44615 0.66 0.701456
Target:  5'- uUCCGCGuGUCCCAcGGCCaGuucuGCUGGa -3'
miRNA:   3'- cAGGUGCuUAGGGU-CUGG-Cu---UGGCCg -5'
1506 3' -55.2 NC_001335.1 + 45992 0.67 0.667845
Target:  5'- cUCCAcCGAGUUCaAGGCCGAGacgcgaaagacguUCGGCa -3'
miRNA:   3'- cAGGU-GCUUAGGgUCUGGCUU-------------GGCCG- -5'
1506 3' -55.2 NC_001335.1 + 47259 0.72 0.399102
Target:  5'- cUCC-CGAGUUcgggCCAGACCGcgUCGGCu -3'
miRNA:   3'- cAGGuGCUUAG----GGUCUGGCuuGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 47721 0.67 0.636106
Target:  5'- -cCCACuAcgCCgAGACCGAGgcUCGGCu -3'
miRNA:   3'- caGGUGcUuaGGgUCUGGCUU--GGCCG- -5'
1506 3' -55.2 NC_001335.1 + 47873 0.66 0.7407
Target:  5'- uGUCCACGAcuucguggaccuuggCCCAGAacu-GCCGGUc -3'
miRNA:   3'- -CAGGUGCUua-------------GGGUCUggcuUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 49111 0.71 0.45614
Target:  5'- gGUCUACaAGUUCCacgaGGACCGcaucGACCGGCu -3'
miRNA:   3'- -CAGGUGcUUAGGG----UCUGGC----UUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 49539 0.67 0.690668
Target:  5'- uUCCGCGAGgcugCCC--ACCGAGCCa-- -3'
miRNA:   3'- cAGGUGCUUa---GGGucUGGCUUGGccg -5'
1506 3' -55.2 NC_001335.1 + 51656 0.66 0.712177
Target:  5'- gGUagGCGGAUCCgagaGGAUCGuGCCGGUg -3'
miRNA:   3'- -CAggUGCUUAGGg---UCUGGCuUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.