Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1506 | 3' | -55.2 | NC_001335.1 | + | 23135 | 0.66 | 0.701456 |
Target: 5'- -aCCuCGAAcuUCUCAGcACCGuuggccguGCCGGCg -3' miRNA: 3'- caGGuGCUU--AGGGUC-UGGCu-------UGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 32204 | 0.66 | 0.712177 |
Target: 5'- -gCUAcCGGucGUUCCAccGACCGAACCcGGCa -3' miRNA: 3'- caGGU-GCU--UAGGGU--CUGGCUUGG-CCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 40031 | 0.66 | 0.743824 |
Target: 5'- cGUCCACGAauGUCCCu--UCGggUacaagcaGGCg -3' miRNA: 3'- -CAGGUGCU--UAGGGucuGGCuuGg------CCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 42341 | 0.68 | 0.603243 |
Target: 5'- cUCUACGA---CCAGAUCGucgcaaucucGACCGGCa -3' miRNA: 3'- cAGGUGCUuagGGUCUGGC----------UUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 29096 | 0.68 | 0.603243 |
Target: 5'- cUCUGCGAcauacCCCGGugUGGAgCGGCu -3' miRNA: 3'- cAGGUGCUua---GGGUCugGCUUgGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 36790 | 0.73 | 0.338617 |
Target: 5'- uGUCCACGAGggcaaCCAcGACC--GCCGGCc -3' miRNA: 3'- -CAGGUGCUUag---GGU-CUGGcuUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 27449 | 0.73 | 0.355199 |
Target: 5'- gGUCugCACGGugccAUCCCAGAuCUGAuccGCCGGCu -3' miRNA: 3'- -CAG--GUGCU----UAGGGUCU-GGCU---UGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 623 | 0.72 | 0.380244 |
Target: 5'- --aCGCGGcauAUUCCAGGCCGcgagauaGGCCGGCa -3' miRNA: 3'- cagGUGCU---UAGGGUCUGGC-------UUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 38366 | 0.72 | 0.390047 |
Target: 5'- uUUgGCGAGUCgCGGGCUG-GCCGGCc -3' miRNA: 3'- cAGgUGCUUAGgGUCUGGCuUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 47259 | 0.72 | 0.399102 |
Target: 5'- cUCC-CGAGUUcgggCCAGACCGcgUCGGCu -3' miRNA: 3'- cAGGuGCUUAG----GGUCUGGCuuGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 49111 | 0.71 | 0.45614 |
Target: 5'- gGUCUACaAGUUCCacgaGGACCGcaucGACCGGCu -3' miRNA: 3'- -CAGGUGcUUAGGG----UCUGGC----UUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 31734 | 0.71 | 0.446325 |
Target: 5'- -gCCGCGGAUgCCgAGAUCcguGAGCUGGCa -3' miRNA: 3'- caGGUGCUUA-GGgUCUGG---CUUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 12184 | 0.69 | 0.5384 |
Target: 5'- -aCCugGc--CCCAGA-CGAGCUGGCg -3' miRNA: 3'- caGGugCuuaGGGUCUgGCUUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 3329 | 0.69 | 0.5384 |
Target: 5'- gGUCCAgCGGaaGUCCCGGcCUGuGACCaGGCa -3' miRNA: 3'- -CAGGU-GCU--UAGGGUCuGGC-UUGG-CCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 20233 | 0.69 | 0.567355 |
Target: 5'- uGUCCuCGAuGUCCCAGACCacgcagccgucccgGAGCgGGa -3' miRNA: 3'- -CAGGuGCU-UAGGGUCUGG--------------CUUGgCCg -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 43291 | 0.69 | 0.570598 |
Target: 5'- -gCUuCGAGUCCgGGACUacaaGACCGGCa -3' miRNA: 3'- caGGuGCUUAGGgUCUGGc---UUGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 7140 | 0.69 | 0.570598 |
Target: 5'- -gCCGCGAcggugAUCCaCGcGGCUGAACgCGGCu -3' miRNA: 3'- caGGUGCU-----UAGG-GU-CUGGCUUG-GCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 7598 | 0.68 | 0.591235 |
Target: 5'- uUCUGCGGggggAUCUCggAGACCGGggugucgGCCGGCg -3' miRNA: 3'- cAGGUGCU----UAGGG--UCUGGCU-------UGGCCG- -5' |
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1506 | 3' | -55.2 | NC_001335.1 | + | 51656 | 0.66 | 0.712177 |
Target: 5'- gGUagGCGGAUCCgagaGGAUCGuGCCGGUg -3' miRNA: 3'- -CAggUGCUUAGGg---UCUGGCuUGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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