miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1506 3' -55.2 NC_001335.1 + 22462 0.67 0.658013
Target:  5'- -aCCggGCGcGUCCCAGACCaGGACCa-- -3'
miRNA:   3'- caGG--UGCuUAGGGUCUGG-CUUGGccg -5'
1506 3' -55.2 NC_001335.1 + 33712 0.67 0.647067
Target:  5'- gGUCCA-GAAccUCCCGGcucuUCGggUCGGCc -3'
miRNA:   3'- -CAGGUgCUU--AGGGUCu---GGCuuGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 41397 0.67 0.636106
Target:  5'- ---gACGAAcgccgacuUCCCGGuGCCgGGGCCGGCg -3'
miRNA:   3'- caggUGCUU--------AGGGUC-UGG-CUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 20066 0.67 0.636106
Target:  5'- uUCUugGcgguGUCgUAGAacgucCCGAACCGGCu -3'
miRNA:   3'- cAGGugCu---UAGgGUCU-----GGCUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 47721 0.67 0.636106
Target:  5'- -cCCACuAcgCCgAGACCGAGgcUCGGCu -3'
miRNA:   3'- caGGUGcUuaGGgUCUGGCUU--GGCCG- -5'
1506 3' -55.2 NC_001335.1 + 14376 0.68 0.625142
Target:  5'- -gCC-CGAGaCCUGGACCGGugcuACCGGUu -3'
miRNA:   3'- caGGuGCUUaGGGUCUGGCU----UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 9076 0.68 0.614185
Target:  5'- ---aACGAcgCCCAGACCGuGCgGGa -3'
miRNA:   3'- caggUGCUuaGGGUCUGGCuUGgCCg -5'
1506 3' -55.2 NC_001335.1 + 7232 0.68 0.603243
Target:  5'- gGUUCACG---UCCAGGCCGuACuCGGCc -3'
miRNA:   3'- -CAGGUGCuuaGGGUCUGGCuUG-GCCG- -5'
1506 3' -55.2 NC_001335.1 + 42341 0.68 0.603243
Target:  5'- cUCUACGA---CCAGAUCGucgcaaucucGACCGGCa -3'
miRNA:   3'- cAGGUGCUuagGGUCUGGC----------UUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 29096 0.68 0.603243
Target:  5'- cUCUGCGAcauacCCCGGugUGGAgCGGCu -3'
miRNA:   3'- cAGGUGCUua---GGGUCugGCUUgGCCG- -5'
1506 3' -55.2 NC_001335.1 + 26573 0.68 0.596689
Target:  5'- cUCCACGcgGAUCagCCggGGACCGAgccgaacggccuugaGCCGGCc -3'
miRNA:   3'- cAGGUGC--UUAG--GG--UCUGGCU---------------UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 7598 0.68 0.591235
Target:  5'- uUCUGCGGggggAUCUCggAGACCGGggugucgGCCGGCg -3'
miRNA:   3'- cAGGUGCU----UAGGG--UCUGGCU-------UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 3858 0.69 0.570598
Target:  5'- aGUUCAcCGGAUCCCuugggcugcaGCCGAuuCCGGCu -3'
miRNA:   3'- -CAGGU-GCUUAGGGuc--------UGGCUu-GGCCG- -5'
1506 3' -55.2 NC_001335.1 + 7140 0.69 0.570598
Target:  5'- -gCCGCGAcggugAUCCaCGcGGCUGAACgCGGCu -3'
miRNA:   3'- caGGUGCU-----UAGG-GU-CUGGCUUG-GCCG- -5'
1506 3' -55.2 NC_001335.1 + 43291 0.69 0.570598
Target:  5'- -gCUuCGAGUCCgGGACUacaaGACCGGCa -3'
miRNA:   3'- caGGuGCUUAGGgUCUGGc---UUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 20233 0.69 0.567355
Target:  5'- uGUCCuCGAuGUCCCAGACCacgcagccgucccgGAGCgGGa -3'
miRNA:   3'- -CAGGuGCU-UAGGGUCUGG--------------CUUGgCCg -5'
1506 3' -55.2 NC_001335.1 + 24688 0.69 0.564116
Target:  5'- cGUCCACGAuGUCCUugcggcGAagcucgaucagcucuCCGAACCGGa -3'
miRNA:   3'- -CAGGUGCU-UAGGGu-----CU---------------GGCUUGGCCg -5'
1506 3' -55.2 NC_001335.1 + 9773 0.69 0.559806
Target:  5'- -aCC-CGAcgGUCCCAGGcuccCCGAGCCccacGGCa -3'
miRNA:   3'- caGGuGCU--UAGGGUCU----GGCUUGG----CCG- -5'
1506 3' -55.2 NC_001335.1 + 497 0.69 0.559806
Target:  5'- aUCCGCGuacgaAAUCCCcgaucugcGGCCGAccgacuucguGCCGGCc -3'
miRNA:   3'- cAGGUGC-----UUAGGGu-------CUGGCU----------UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 32757 0.69 0.559806
Target:  5'- -cCCACGggUCgCuGuACUGA-CCGGCg -3'
miRNA:   3'- caGGUGCuuAGgGuC-UGGCUuGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.