miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1507 5' -50.9 NC_001335.1 + 22631 0.67 0.885991
Target:  5'- uCCAgUCGaCGcUGCAGcuCCGCGAUGGCa -3'
miRNA:   3'- -GGU-AGUgGU-ACGUCuuGGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 5937 0.67 0.882916
Target:  5'- aCAUCuACCGgugGCAGcccaucggcaacuACC-CGGCAGCg -3'
miRNA:   3'- gGUAG-UGGUa--CGUCu------------UGGuGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 24193 0.67 0.878222
Target:  5'- gCCAgCACCgccgcucuGUGCGGAGaCCugGGCaccAGCc -3'
miRNA:   3'- -GGUaGUGG--------UACGUCUU-GGugCUG---UCG- -5'
1507 5' -50.9 NC_001335.1 + 19410 0.67 0.870184
Target:  5'- gCAUC-CCGacGUAGAGCUgcGCGAUGGCg -3'
miRNA:   3'- gGUAGuGGUa-CGUCUUGG--UGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 46354 0.67 0.870184
Target:  5'- ---gCGCCuggcGCAGAGCCAgcGCAGCu -3'
miRNA:   3'- gguaGUGGua--CGUCUUGGUgcUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 20787 0.67 0.870184
Target:  5'- gCCAUCGCaucGCAGAuCCacaagACGAgGGCu -3'
miRNA:   3'- -GGUAGUGguaCGUCUuGG-----UGCUgUCG- -5'
1507 5' -50.9 NC_001335.1 + 31088 0.67 0.870184
Target:  5'- aCAUcCGCCAgGCGu-ACCugGGCGGUa -3'
miRNA:   3'- gGUA-GUGGUaCGUcuUGGugCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 41039 0.67 0.870184
Target:  5'- aCGUCACCG-GCcc-GCacaACGACGGCg -3'
miRNA:   3'- gGUAGUGGUaCGucuUGg--UGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 29314 0.67 0.861884
Target:  5'- gCAUCGCCGcacgaucCAGuccGACgACGGCAGCg -3'
miRNA:   3'- gGUAGUGGUac-----GUC---UUGgUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 10999 0.67 0.853329
Target:  5'- aCCGcuuaCACCGaacUGCAGAACCAguuggGACAGg -3'
miRNA:   3'- -GGUa---GUGGU---ACGUCUUGGUg----CUGUCg -5'
1507 5' -50.9 NC_001335.1 + 14093 0.67 0.853329
Target:  5'- aCCGUCucUgGUGUAGGcggucauuucgACCAcCGGCAGCg -3'
miRNA:   3'- -GGUAGu-GgUACGUCU-----------UGGU-GCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 12967 0.67 0.853329
Target:  5'- gCAUCACCAcGUucGGGACgAUGACcGCc -3'
miRNA:   3'- gGUAGUGGUaCG--UCUUGgUGCUGuCG- -5'
1507 5' -50.9 NC_001335.1 + 46181 0.67 0.853329
Target:  5'- aCAUCGCCGagcacgGCGGAaaagucGCCgACGAC-GCa -3'
miRNA:   3'- gGUAGUGGUa-----CGUCU------UGG-UGCUGuCG- -5'
1507 5' -50.9 NC_001335.1 + 10266 0.67 0.853329
Target:  5'- cCCcgCAgaUCGUGCAGGGCUggGCGAgGGUc -3'
miRNA:   3'- -GGuaGU--GGUACGUCUUGG--UGCUgUCG- -5'
1507 5' -50.9 NC_001335.1 + 47850 0.67 0.85246
Target:  5'- gCAUCACCGcaGCAacGCCGCGAUccuugcuGGCu -3'
miRNA:   3'- gGUAGUGGUa-CGUcuUGGUGCUG-------UCG- -5'
1507 5' -50.9 NC_001335.1 + 46716 0.68 0.844529
Target:  5'- aCCGUCuuGCaGUGCAGGgccugaGCCAUGccguGCAGCa -3'
miRNA:   3'- -GGUAG--UGgUACGUCU------UGGUGC----UGUCG- -5'
1507 5' -50.9 NC_001335.1 + 29518 0.68 0.844529
Target:  5'- gCCAUCuucgACCAgcuugucgaGCAGAGCCGCguuGACcuGGCg -3'
miRNA:   3'- -GGUAG----UGGUa--------CGUCUUGGUG---CUG--UCG- -5'
1507 5' -50.9 NC_001335.1 + 22545 0.68 0.835491
Target:  5'- cUCGUCuGCCAUcGCGGAGCU---GCAGCg -3'
miRNA:   3'- -GGUAG-UGGUA-CGUCUUGGugcUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 30267 0.68 0.835491
Target:  5'- uUCAUCGaggaCGUGCGGAucGCCAuCGGC-GCu -3'
miRNA:   3'- -GGUAGUg---GUACGUCU--UGGU-GCUGuCG- -5'
1507 5' -50.9 NC_001335.1 + 10341 0.68 0.835491
Target:  5'- cCCAgccCugCAcgaucUGCGGGGCCGgaucguucuUGACAGCg -3'
miRNA:   3'- -GGUa--GugGU-----ACGUCUUGGU---------GCUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.