miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1508 3' -56 NC_001335.1 + 27484 0.68 0.526829
Target:  5'- cCCACCucucCGAGGCAGaCGCCgacuucaUAUGCg -3'
miRNA:   3'- -GGUGGuc--GCUCUGUC-GCGGa------AUGCGg -5'
1508 3' -56 NC_001335.1 + 28579 0.7 0.455473
Target:  5'- gUCGCCuGCGGGAagguGGCGCaCUcgGCGCUc -3'
miRNA:   3'- -GGUGGuCGCUCUg---UCGCG-GAa-UGCGG- -5'
1508 3' -56 NC_001335.1 + 28676 0.75 0.215
Target:  5'- gCGCCAagGAGAUggAGCGCCgagUGCGCCa -3'
miRNA:   3'- gGUGGUcgCUCUG--UCGCGGa--AUGCGG- -5'
1508 3' -56 NC_001335.1 + 29328 0.71 0.389662
Target:  5'- uCCAguCCGaCGAcGGCAGCGUC-UGCGCCg -3'
miRNA:   3'- -GGU--GGUcGCU-CUGUCGCGGaAUGCGG- -5'
1508 3' -56 NC_001335.1 + 30167 0.66 0.689099
Target:  5'- gCACCAuGCGcuuGAgAGCGCCgaugGCGauCCg -3'
miRNA:   3'- gGUGGU-CGCu--CUgUCGCGGaa--UGC--GG- -5'
1508 3' -56 NC_001335.1 + 31082 0.67 0.5987
Target:  5'- -gGCCGGUcucaggcuugaccuGAGcCAGCGCCU--UGCCg -3'
miRNA:   3'- ggUGGUCG--------------CUCuGUCGCGGAauGCGG- -5'
1508 3' -56 NC_001335.1 + 31843 0.71 0.398678
Target:  5'- -gGCCcGCGAGGCAGCGCgagCUguccUGCCg -3'
miRNA:   3'- ggUGGuCGCUCUGUCGCG---GAau--GCGG- -5'
1508 3' -56 NC_001335.1 + 33069 0.66 0.689099
Target:  5'- -aGCCGuCGaAGACGGUGUCgaugaagagUGCGCCa -3'
miRNA:   3'- ggUGGUcGC-UCUGUCGCGGa--------AUGCGG- -5'
1508 3' -56 NC_001335.1 + 34577 0.69 0.505963
Target:  5'- gCCACgAcUGGGcCGGUGCC-UACGCCa -3'
miRNA:   3'- -GGUGgUcGCUCuGUCGCGGaAUGCGG- -5'
1508 3' -56 NC_001335.1 + 37237 0.67 0.63471
Target:  5'- cUCGCCAGUGGGACAccuUGCUggACGUUc -3'
miRNA:   3'- -GGUGGUCGCUCUGUc--GCGGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 37854 0.68 0.548009
Target:  5'- --uCgGGCGuucGGCAGCGUCUU-CGCCa -3'
miRNA:   3'- gguGgUCGCu--CUGUCGCGGAAuGCGG- -5'
1508 3' -56 NC_001335.1 + 38497 0.7 0.436047
Target:  5'- aCugCGGC-AGACGGCGUUUcguCGCCg -3'
miRNA:   3'- gGugGUCGcUCUGUCGCGGAau-GCGG- -5'
1508 3' -56 NC_001335.1 + 39039 0.68 0.557628
Target:  5'- uCUGCCAGCGAGcCaacgguaagaagaAGCGCCUgucgguCGaCCa -3'
miRNA:   3'- -GGUGGUCGCUCuG-------------UCGCGGAau----GC-GG- -5'
1508 3' -56 NC_001335.1 + 39360 1.13 0.000473
Target:  5'- cCCACCAGCGAGACAGCGCCUUACGCCc -3'
miRNA:   3'- -GGUGGUCGCUCUGUCGCGGAAUGCGG- -5'
1508 3' -56 NC_001335.1 + 39701 0.72 0.354956
Target:  5'- cCCAggcCCAGCGGucugcgaugucGuCAGCGCCgcgaGCGCCg -3'
miRNA:   3'- -GGU---GGUCGCU-----------CuGUCGCGGaa--UGCGG- -5'
1508 3' -56 NC_001335.1 + 42196 0.67 0.601966
Target:  5'- aUCACCAGCGcGuGCAGCuCCUc-UGCCg -3'
miRNA:   3'- -GGUGGUCGCuC-UGUCGcGGAauGCGG- -5'
1508 3' -56 NC_001335.1 + 45089 0.67 0.600877
Target:  5'- gCUACCgAGUGGGGCAG-GCCgcuacauUUACGaCCg -3'
miRNA:   3'- -GGUGG-UCGCUCUGUCgCGG-------AAUGC-GG- -5'
1508 3' -56 NC_001335.1 + 46210 0.66 0.689099
Target:  5'- cCCGCuCuGUGAGuaccggagcGCAGCGCacauCGCCg -3'
miRNA:   3'- -GGUG-GuCGCUC---------UGUCGCGgaauGCGG- -5'
1508 3' -56 NC_001335.1 + 46248 0.66 0.667431
Target:  5'- cCCGCCAGCGcGugGuucauCGCCgcguUGCgGCCg -3'
miRNA:   3'- -GGUGGUCGCuCugUc----GCGGa---AUG-CGG- -5'
1508 3' -56 NC_001335.1 + 46477 0.66 0.678287
Target:  5'- uCgGCCGGCGGGGgAGCGUUgg-UGCUc -3'
miRNA:   3'- -GgUGGUCGCUCUgUCGCGGaauGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.