miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1509 5' -57 NC_001335.1 + 25388 0.66 0.621869
Target:  5'- gUCGCggaUGGGGAucGcUGAagacUCAGCGCAg -3'
miRNA:   3'- -GGCGg--ACCCCUcuCaACU----AGUCGCGU- -5'
1509 5' -57 NC_001335.1 + 41672 0.67 0.546088
Target:  5'- aCGCCUGGGGccGGcUGGUCucuCGCGa -3'
miRNA:   3'- gGCGGACCCCucUCaACUAGuc-GCGU- -5'
1509 5' -57 NC_001335.1 + 28579 0.67 0.546088
Target:  5'- gUCGCCUGcGGGAaGGUggcgcacUCGGCGCu -3'
miRNA:   3'- -GGCGGAC-CCCUcUCAacu----AGUCGCGu -5'
1509 5' -57 NC_001335.1 + 27287 0.7 0.396948
Target:  5'- aCGCCUcGGcGAG-GUUGGccUCGGCGCGg -3'
miRNA:   3'- gGCGGAcCC-CUCuCAACU--AGUCGCGU- -5'
1509 5' -57 NC_001335.1 + 40310 1.1 0.000497
Target:  5'- cCCGCCUGGGGAGAGUUGAUCAGCGCAg -3'
miRNA:   3'- -GGCGGACCCCUCUCAACUAGUCGCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.