miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
151 5' -60.9 AC_000006.1 + 15686 0.66 0.306295
Target:  5'- -aUCAGGGacgaggaGGaCGGGugcGCACGGGCACGc -3'
miRNA:   3'- caGGUCCCa------UC-GCCC---CGUGUCCGUGU- -5'
151 5' -60.9 AC_000006.1 + 13369 0.66 0.274722
Target:  5'- -aCCAGGccccgcugccggucGUGGCGcugucgccGcGGCGCGGGCGCAg -3'
miRNA:   3'- caGGUCC--------------CAUCGC--------C-CCGUGUCCGUGU- -5'
151 5' -60.9 AC_000006.1 + 25715 0.67 0.255597
Target:  5'- -aCCAGGGUGGa-GGGCcaauuacGCGGGUugAg -3'
miRNA:   3'- caGGUCCCAUCgcCCCG-------UGUCCGugU- -5'
151 5' -60.9 AC_000006.1 + 15836 0.67 0.242615
Target:  5'- cUCCGcGGcGGCgcguaaauuggaaGGGGCGCAGGUGCAc -3'
miRNA:   3'- cAGGUcCCaUCG-------------CCCCGUGUCCGUGU- -5'
151 5' -60.9 AC_000006.1 + 8352 0.67 0.236954
Target:  5'- -cCCGcGGGcAGgGGcGGCAgAGGCACGu -3'
miRNA:   3'- caGGU-CCCaUCgCC-CCGUgUCCGUGU- -5'
151 5' -60.9 AC_000006.1 + 21063 0.67 0.236954
Target:  5'- cGUCCAuGGGUcGGUcGGGC-CAGuGCACGa -3'
miRNA:   3'- -CAGGU-CCCA-UCGcCCCGuGUC-CGUGU- -5'
151 5' -60.9 AC_000006.1 + 17662 0.67 0.224771
Target:  5'- aGUUCuGGGccuggcggcgGGCGGGGaCGCGGcGCACGg -3'
miRNA:   3'- -CAGGuCCCa---------UCGCCCC-GUGUC-CGUGU- -5'
151 5' -60.9 AC_000006.1 + 23670 0.68 0.196627
Target:  5'- cUCCAGGGccuG-GGGGuCGCGGGUACc -3'
miRNA:   3'- cAGGUCCCau-CgCCCC-GUGUCCGUGu -5'
151 5' -60.9 AC_000006.1 + 10686 0.69 0.181257
Target:  5'- -gCCGGGGgGGUGGGaCGCAuuuGGCGCAg -3'
miRNA:   3'- caGGUCCCaUCGCCCcGUGU---CCGUGU- -5'
151 5' -60.9 AC_000006.1 + 15550 0.71 0.13367
Target:  5'- aGUCCugccugcggGGGGUgcAGUGGcGGCGCGGcGCGCGg -3'
miRNA:   3'- -CAGG---------UCCCA--UCGCC-CCGUGUC-CGUGU- -5'
151 5' -60.9 AC_000006.1 + 3208 0.71 0.122496
Target:  5'- aGUCCAGGGUGcgcgcuugcgaguGCGGGG-GCAGaCACAc -3'
miRNA:   3'- -CAGGUCCCAU-------------CGCCCCgUGUCcGUGU- -5'
151 5' -60.9 AC_000006.1 + 32863 1.07 0.000166
Target:  5'- aGUCCAGGGUAGCGGGGCACAGGCACAc -3'
miRNA:   3'- -CAGGUCCCAUCGCCCCGUGUCCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.