Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1510 | 3' | -50.6 | NC_001335.1 | + | 40780 | 1.12 | 0.002042 |
Target: 5'- uCCGACGAACUCCAAGGAAGCGAAGUCu -3' miRNA: 3'- -GGCUGCUUGAGGUUCCUUCGCUUCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 31861 | 0.77 | 0.368022 |
Target: 5'- gCUGACGGACUCCAugauguGGA--CGAGGUCg -3' miRNA: 3'- -GGCUGCUUGAGGUu-----CCUucGCUUCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 4871 | 0.77 | 0.377017 |
Target: 5'- cUCGuCGGGCUCCAGcacGGAggcGGCGggGUCu -3' miRNA: 3'- -GGCuGCUUGAGGUU---CCU---UCGCuuCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 6594 | 0.74 | 0.527959 |
Target: 5'- aCGACGAA-UCUgagaAAGGAGGCGggGUg -3' miRNA: 3'- gGCUGCUUgAGG----UUCCUUCGCuuCAg -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 2256 | 0.74 | 0.537802 |
Target: 5'- uCCGACGAgaagcucgccgaaGC-CCAGcGGGccAGCGAGGUCg -3' miRNA: 3'- -GGCUGCU-------------UGaGGUU-CCU--UCGCUUCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 1188 | 0.74 | 0.549916 |
Target: 5'- -gGugGAGCUgCAGGGAgcAGCGGAGg- -3' miRNA: 3'- ggCugCUUGAgGUUCCU--UCGCUUCag -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 47304 | 0.73 | 0.605859 |
Target: 5'- aCCaGCGAGCguucCCAugcgAGGAGGaCGAAGUCu -3' miRNA: 3'- -GGcUGCUUGa---GGU----UCCUUC-GCUUCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 22234 | 0.73 | 0.605859 |
Target: 5'- cUCGGCGAACUUC-AGGAacAGCGGGccGUCu -3' miRNA: 3'- -GGCUGCUUGAGGuUCCU--UCGCUU--CAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 19222 | 0.72 | 0.66689 |
Target: 5'- aCCGGgGAGC-CCGAcucGGAAGCGAucugcuccucgcgccGGUCg -3' miRNA: 3'- -GGCUgCUUGaGGUU---CCUUCGCU---------------UCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 37883 | 0.71 | 0.707125 |
Target: 5'- aCCgGGCGAACUCCAuaccGGCGucGUCg -3' miRNA: 3'- -GG-CUGCUUGAGGUuccuUCGCuuCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 11230 | 0.7 | 0.761211 |
Target: 5'- gCCGACcAGCUCCAgacGGGAcuucacugacucAGCGAugcuGUCc -3' miRNA: 3'- -GGCUGcUUGAGGU---UCCU------------UCGCUu---CAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 12500 | 0.69 | 0.781954 |
Target: 5'- uUGGCGAACUCCucGGAaaccucGGCGAAa-- -3' miRNA: 3'- gGCUGCUUGAGGuuCCU------UCGCUUcag -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 8149 | 0.69 | 0.801052 |
Target: 5'- aCUG-CGAGCgacUCGAGGAcgcgguccuugagGGCGAGGUCu -3' miRNA: 3'- -GGCuGCUUGa--GGUUCCU-------------UCGCUUCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 49413 | 0.69 | 0.80204 |
Target: 5'- gCGugGGACUgCCAAcgcugcGGcGGCGAGGUUu -3' miRNA: 3'- gGCugCUUGA-GGUU------CCuUCGCUUCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 14772 | 0.68 | 0.829805 |
Target: 5'- gCGGCGAACUCCAgccuuguGGGcgugaugccccAGGCGcauGUCg -3' miRNA: 3'- gGCUGCUUGAGGU-------UCC-----------UUCGCuu-CAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 20086 | 0.68 | 0.838964 |
Target: 5'- gCUGAUGGuCUUCGAGGAucuucuuGGCGguGUCg -3' miRNA: 3'- -GGCUGCUuGAGGUUCCU-------UCGCuuCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 39309 | 0.68 | 0.857438 |
Target: 5'- -gGACGcGCgugCCGAGGGcGGCGAagaGGUCu -3' miRNA: 3'- ggCUGCuUGa--GGUUCCU-UCGCU---UCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 46486 | 0.68 | 0.857438 |
Target: 5'- gCCGugGAAUcggCCGgcgGGGGAGCGuuGGUg -3' miRNA: 3'- -GGCugCUUGa--GGU---UCCUUCGCu-UCAg -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 23779 | 0.68 | 0.865855 |
Target: 5'- cCCGcCGccucCUCCGAGGAGGaUGAcGUCg -3' miRNA: 3'- -GGCuGCuu--GAGGUUCCUUC-GCUuCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 35478 | 0.67 | 0.874014 |
Target: 5'- gCCGcCGAuCUCCGAguucuuGGGAGgGAGGUg -3' miRNA: 3'- -GGCuGCUuGAGGUU------CCUUCgCUUCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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