miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1510 5' -54.6 NC_001335.1 + 36916 0.66 0.769344
Target:  5'- cCCGAg--CCCgUCUCGGUg---GACCa -3'
miRNA:   3'- -GGCUgaaGGGgGGAGCCAagaaCUGG- -5'
1510 5' -54.6 NC_001335.1 + 15905 0.66 0.767337
Target:  5'- cCCGGCggaaCUCCUUGGUguucgggcugacCUUGACCg -3'
miRNA:   3'- -GGCUGaaggGGGGAGCCAa-----------GAACUGG- -5'
1510 5' -54.6 NC_001335.1 + 46032 0.67 0.749042
Target:  5'- gCgGGCUUCgCCCUUCGGUgauUCgucacaUGACg -3'
miRNA:   3'- -GgCUGAAGgGGGGAGCCA---AGa-----ACUGg -5'
1510 5' -54.6 NC_001335.1 + 26856 0.67 0.738711
Target:  5'- uCCGAgUUCCgCCUggaggucguCUCGGUUCUccugggugaUGACa -3'
miRNA:   3'- -GGCUgAAGG-GGG---------GAGCCAAGA---------ACUGg -5'
1510 5' -54.6 NC_001335.1 + 13954 0.67 0.73871
Target:  5'- aCCGucAC-UCCCUCCagUCGGgggUC-UGACCg -3'
miRNA:   3'- -GGC--UGaAGGGGGG--AGCCa--AGaACUGG- -5'
1510 5' -54.6 NC_001335.1 + 10902 0.67 0.728274
Target:  5'- aUCGGCUUCUCgaCCUCcGGggUCUcGGCCu -3'
miRNA:   3'- -GGCUGAAGGGg-GGAG-CCa-AGAaCUGG- -5'
1510 5' -54.6 NC_001335.1 + 32795 0.67 0.728274
Target:  5'- gCCGACa--CCCCaUCGGUggagugCUgGACCg -3'
miRNA:   3'- -GGCUGaagGGGGgAGCCAa-----GAaCUGG- -5'
1510 5' -54.6 NC_001335.1 + 32383 0.7 0.543981
Target:  5'- aCCGGCUUCUCgaCCUCGGUggaugucaaguagUCgagaUGACUa -3'
miRNA:   3'- -GGCUGAAGGGg-GGAGCCA-------------AGa---ACUGG- -5'
1510 5' -54.6 NC_001335.1 + 5041 0.7 0.534464
Target:  5'- -gGAC-UCCCagucgacgCCUCGGUcggacaUCUUGACCg -3'
miRNA:   3'- ggCUGaAGGGg-------GGAGCCA------AGAACUGG- -5'
1510 5' -54.6 NC_001335.1 + 52207 0.77 0.237515
Target:  5'- -gGGgUUCCCCCUaggggUCGGUcCUUGACCg -3'
miRNA:   3'- ggCUgAAGGGGGG-----AGCCAaGAACUGG- -5'
1510 5' -54.6 NC_001335.1 + 40820 1.14 0.000607
Target:  5'- uCCGACUUCCCCCCUCGGUUCUUGACCg -3'
miRNA:   3'- -GGCUGAAGGGGGGAGCCAAGAACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.