miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1512 3' -54 NC_001335.1 + 26133 0.66 0.793068
Target:  5'- cCGAaGUacCUGuCUCGCGGcCAGaaCCCGCg -3'
miRNA:   3'- -GCUaCAa-GAC-GAGCGCUuGUC--GGGCG- -5'
1512 3' -54 NC_001335.1 + 16764 0.66 0.793068
Target:  5'- gGAguccggUCUGCagGCGAugggacagcucgGCGGUCCGCu -3'
miRNA:   3'- gCUaca---AGACGagCGCU------------UGUCGGGCG- -5'
1512 3' -54 NC_001335.1 + 42616 0.66 0.787128
Target:  5'- -cAUGUUCgGCUCGauaccucucgcgucaCGAACuccuGCCCGUu -3'
miRNA:   3'- gcUACAAGaCGAGC---------------GCUUGu---CGGGCG- -5'
1512 3' -54 NC_001335.1 + 19166 0.66 0.783136
Target:  5'- cCGGUGUgg-GCUCGgaUGAACGGUguccgguuCCGCa -3'
miRNA:   3'- -GCUACAagaCGAGC--GCUUGUCG--------GGCG- -5'
1512 3' -54 NC_001335.1 + 34421 0.66 0.773044
Target:  5'- aGAcGUUCgGUggaGUGGccaGCGGCCCGCu -3'
miRNA:   3'- gCUaCAAGaCGag-CGCU---UGUCGGGCG- -5'
1512 3' -54 NC_001335.1 + 11055 0.66 0.762804
Target:  5'- gCGGUGUcgcGCUCaGCGAGCuuGGCCuCGUa -3'
miRNA:   3'- -GCUACAagaCGAG-CGCUUG--UCGG-GCG- -5'
1512 3' -54 NC_001335.1 + 22645 0.66 0.759705
Target:  5'- ---cGUUCUGCUgguuguccagucgaCGCu-GCAGCuCCGCg -3'
miRNA:   3'- gcuaCAAGACGA--------------GCGcuUGUCG-GGCG- -5'
1512 3' -54 NC_001335.1 + 36880 0.67 0.741926
Target:  5'- aGA-GUUC-GCUCaGCGGAUcaAGCCCGa -3'
miRNA:   3'- gCUaCAAGaCGAG-CGCUUG--UCGGGCg -5'
1512 3' -54 NC_001335.1 + 15117 0.69 0.621503
Target:  5'- aGGUGUUCaaggaGUUCGCGGACAucCCCGa -3'
miRNA:   3'- gCUACAAGa----CGAGCGCUUGUc-GGGCg -5'
1512 3' -54 NC_001335.1 + 31743 0.69 0.610401
Target:  5'- uCGGUGaguucgUCaUGUUCGgcaGGACAGCUCGCg -3'
miRNA:   3'- -GCUACa-----AG-ACGAGCg--CUUGUCGGGCG- -5'
1512 3' -54 NC_001335.1 + 18028 0.69 0.577246
Target:  5'- uCGAgcugGUUCUGCagCGCcucuCGGCCUGCc -3'
miRNA:   3'- -GCUa---CAAGACGa-GCGcuu-GUCGGGCG- -5'
1512 3' -54 NC_001335.1 + 3649 0.7 0.512388
Target:  5'- -cGUGUUgaccaaCUGCUCgGUGAGCGGCuuGCu -3'
miRNA:   3'- gcUACAA------GACGAG-CGCUUGUCGggCG- -5'
1512 3' -54 NC_001335.1 + 38280 0.72 0.431092
Target:  5'- ---aGUUCcGCUCGgcCGGcCAGCCCGCg -3'
miRNA:   3'- gcuaCAAGaCGAGC--GCUuGUCGGGCG- -5'
1512 3' -54 NC_001335.1 + 49468 0.72 0.4026
Target:  5'- uCGGUGggCaGcCUCGCGGAagguCAGCCCGUc -3'
miRNA:   3'- -GCUACaaGaC-GAGCGCUU----GUCGGGCG- -5'
1512 3' -54 NC_001335.1 + 28999 0.72 0.4026
Target:  5'- cCGGUGgaCaGCUCGCGGACAuacUCCGCg -3'
miRNA:   3'- -GCUACaaGaCGAGCGCUUGUc--GGGCG- -5'
1512 3' -54 NC_001335.1 + 19459 0.78 0.193074
Target:  5'- uGAgccGUUcCUGCUCGCGcuuGCAGCgCCGCa -3'
miRNA:   3'- gCUa--CAA-GACGAGCGCu--UGUCG-GGCG- -5'
1512 3' -54 NC_001335.1 + 41251 1.13 0.000732
Target:  5'- uCGAUGUUCUGCUCGCGAACAGCCCGCg -3'
miRNA:   3'- -GCUACAAGACGAGCGCUUGUCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.