miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1514 5' -62 NC_001335.1 + 48241 0.66 0.394225
Target:  5'- cGCCUacgauGCCAGCGUggaCCaCCuUGCGGCGc -3'
miRNA:   3'- aCGGG-----CGGUCGCA---GG-GGcAUGUCGCc -5'
1514 5' -62 NC_001335.1 + 10728 0.66 0.385605
Target:  5'- aGCgCGUUgAGCGUCUCCGUguucuuguucuuGgAGCGGg -3'
miRNA:   3'- aCGgGCGG-UCGCAGGGGCA------------UgUCGCC- -5'
1514 5' -62 NC_001335.1 + 46090 0.66 0.377111
Target:  5'- aGCCCGCCGGgacaaCGacaaCCGggACGGCGGc -3'
miRNA:   3'- aCGGGCGGUC-----GCagg-GGCa-UGUCGCC- -5'
1514 5' -62 NC_001335.1 + 9336 0.66 0.377111
Target:  5'- uUGCCC-UCAGCGUCCUCGaACGccaGGa -3'
miRNA:   3'- -ACGGGcGGUCGCAGGGGCaUGUcg-CC- -5'
1514 5' -62 NC_001335.1 + 27178 0.68 0.29716
Target:  5'- -aCCC-CCAGCGUCCCgGUGuucauccagaugccCGGUGGc -3'
miRNA:   3'- acGGGcGGUCGCAGGGgCAU--------------GUCGCC- -5'
1514 5' -62 NC_001335.1 + 2545 0.69 0.252597
Target:  5'- aG-CCGCCgagGGCGUagCCCG-ACGGCGGg -3'
miRNA:   3'- aCgGGCGG---UCGCAg-GGGCaUGUCGCC- -5'
1514 5' -62 NC_001335.1 + 43826 0.69 0.246438
Target:  5'- cGUCuCGuUCAGCG-CCCCGUcgACAGCGa -3'
miRNA:   3'- aCGG-GC-GGUCGCaGGGGCA--UGUCGCc -5'
1514 5' -62 NC_001335.1 + 6134 0.69 0.246438
Target:  5'- aGCCgGCCAGCGcgaagUCCgCGUACGGa-- -3'
miRNA:   3'- aCGGgCGGUCGC-----AGGgGCAUGUCgcc -5'
1514 5' -62 NC_001335.1 + 1231 0.69 0.234494
Target:  5'- cGCCgGUaccggaGGCGUCaCCGgugGCGGCGGa -3'
miRNA:   3'- aCGGgCGg-----UCGCAGgGGCa--UGUCGCC- -5'
1514 5' -62 NC_001335.1 + 22583 0.7 0.212064
Target:  5'- gUGCCgGCCAGC-UCgCCGaUACgcucGGCGGg -3'
miRNA:   3'- -ACGGgCGGUCGcAGgGGC-AUG----UCGCC- -5'
1514 5' -62 NC_001335.1 + 49493 0.7 0.212064
Target:  5'- aGCCCGUCGucguacGCGUCCCgGUACGuccaguccGCGa -3'
miRNA:   3'- aCGGGCGGU------CGCAGGGgCAUGU--------CGCc -5'
1514 5' -62 NC_001335.1 + 17015 0.7 0.206753
Target:  5'- gUGCUCGCCAGCGUCUggaaGgcCGGCGu -3'
miRNA:   3'- -ACGGGCGGUCGCAGGgg--CauGUCGCc -5'
1514 5' -62 NC_001335.1 + 46246 0.7 0.191505
Target:  5'- aGCCCGCCAGCGcgugguucaUCgCCGcGuuGCGGc -3'
miRNA:   3'- aCGGGCGGUCGC---------AGgGGCaUguCGCC- -5'
1514 5' -62 NC_001335.1 + 4624 0.72 0.147614
Target:  5'- gGCCCGCgcucgcgaCGGUcUCCCCuacgcGUACGGCGGg -3'
miRNA:   3'- aCGGGCG--------GUCGcAGGGG-----CAUGUCGCC- -5'
1514 5' -62 NC_001335.1 + 39627 0.72 0.143768
Target:  5'- aGCCCGCUugccguAGCGUUCCCagucggcucgGUGCAGCucGGg -3'
miRNA:   3'- aCGGGCGG------UCGCAGGGG----------CAUGUCG--CC- -5'
1514 5' -62 NC_001335.1 + 19523 0.73 0.129285
Target:  5'- cGCUCGCCAGCGaCCaggCCGcGCAGgCGGa -3'
miRNA:   3'- aCGGGCGGUCGCaGG---GGCaUGUC-GCC- -5'
1514 5' -62 NC_001335.1 + 24996 0.75 0.087637
Target:  5'- cUGCCCGCCGGCaugccuacaacGUCCuCCGggcggugaugaacACAGCGGu -3'
miRNA:   3'- -ACGGGCGGUCG-----------CAGG-GGCa------------UGUCGCC- -5'
1514 5' -62 NC_001335.1 + 41791 1.09 0.000242
Target:  5'- gUGCCCGCCAGCGUCCCCGUACAGCGGc -3'
miRNA:   3'- -ACGGGCGGUCGCAGGGGCAUGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.