miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1516 3' -58.9 NC_001335.1 + 46019 0.66 0.516454
Target:  5'- uGUCGUUGuCCCGGCGGGcUUcGCCcuucGGUg -3'
miRNA:   3'- uCAGCAGU-GGGCCGCUC-AA-CGG----CCAg -5'
1516 3' -58.9 NC_001335.1 + 32854 0.66 0.515426
Target:  5'- cGUCGUCACCgucgccgaCGGCGcggucucaggcucAGgaGCCGGg- -3'
miRNA:   3'- uCAGCAGUGG--------GCCGC-------------UCaaCGGCCag -5'
1516 3' -58.9 NC_001335.1 + 32101 0.66 0.496074
Target:  5'- uAGUCcUCGuuCUCGGC-AGUUGCCGGg- -3'
miRNA:   3'- -UCAGcAGU--GGGCCGcUCAACGGCCag -5'
1516 3' -58.9 NC_001335.1 + 39607 0.67 0.456467
Target:  5'- cAGUCGgCACCCGGCacugcaugcgaGAGgccgaaaggGCCGG-Ca -3'
miRNA:   3'- -UCAGCaGUGGGCCG-----------CUCaa-------CGGCCaG- -5'
1516 3' -58.9 NC_001335.1 + 35173 0.67 0.446831
Target:  5'- cGUCGUUACCU-GCGAGgUGCguggugcaggccCGGUCg -3'
miRNA:   3'- uCAGCAGUGGGcCGCUCaACG------------GCCAG- -5'
1516 3' -58.9 NC_001335.1 + 4745 0.67 0.427906
Target:  5'- cAGUCGaCACCCu-CGGGUUGuuGGUg -3'
miRNA:   3'- -UCAGCaGUGGGccGCUCAACggCCAg -5'
1516 3' -58.9 NC_001335.1 + 34283 0.68 0.382749
Target:  5'- uGUUGUgGCC-GGCGGuGUgcGCCGGUCg -3'
miRNA:   3'- uCAGCAgUGGgCCGCU-CAa-CGGCCAG- -5'
1516 3' -58.9 NC_001335.1 + 20024 0.69 0.340875
Target:  5'- -aUCGUgA-CCGGUGAGUUGUCGGcCa -3'
miRNA:   3'- ucAGCAgUgGGCCGCUCAACGGCCaG- -5'
1516 3' -58.9 NC_001335.1 + 48658 0.69 0.325079
Target:  5'- uGUCGaggUCACuUCGGuCGAGUacaaGCCGGUCg -3'
miRNA:   3'- uCAGC---AGUG-GGCC-GCUCAa---CGGCCAG- -5'
1516 3' -58.9 NC_001335.1 + 51826 0.7 0.317387
Target:  5'- uGGUCGUCGCCCcGuCGcuGUcGCUGGUCu -3'
miRNA:   3'- -UCAGCAGUGGGcC-GCu-CAaCGGCCAG- -5'
1516 3' -58.9 NC_001335.1 + 43192 1.09 0.000458
Target:  5'- aAGUCGUCACCCGGCGAGUUGCCGGUCu -3'
miRNA:   3'- -UCAGCAGUGGGCCGCUCAACGGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.