Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1516 | 5' | -53.8 | NC_001335.1 | + | 31363 | 0.66 | 0.789825 |
Target: 5'- aGGuCUCGAuGCUUuccgaggagacaACCGgUUGGCCAUc -3' miRNA: 3'- gCCuGAGCUuCGAG------------UGGC-AACUGGUG- -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 19180 | 0.66 | 0.779825 |
Target: 5'- uCGGugUCGAugacgcAGUucUCGCCGUaGAUCAa -3' miRNA: 3'- -GCCugAGCU------UCG--AGUGGCAaCUGGUg -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 36855 | 0.66 | 0.779825 |
Target: 5'- aCGGGCUCGGguaguccaucAGgUCACCGaugugGACgACc -3' miRNA: 3'- -GCCUGAGCU----------UCgAGUGGCaa---CUGgUG- -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 24573 | 0.66 | 0.769669 |
Target: 5'- aGGGCccCGAGGCauUC-CUGgUGACCACg -3' miRNA: 3'- gCCUGa-GCUUCG--AGuGGCaACUGGUG- -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 43693 | 0.66 | 0.759367 |
Target: 5'- aGGuCUaCGAgaaGGCUCugGCCGagGGCCGCg -3' miRNA: 3'- gCCuGA-GCU---UCGAG--UGGCaaCUGGUG- -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 11257 | 0.66 | 0.759367 |
Target: 5'- aGGACUCGggGUcuugUUGCCGaauccgccGACCAg -3' miRNA: 3'- gCCUGAGCuuCG----AGUGGCaa------CUGGUg -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 5372 | 0.67 | 0.738377 |
Target: 5'- -cGAUUCGGugcAGCUCACCGa-GAUCGCc -3' miRNA: 3'- gcCUGAGCU---UCGAGUGGCaaCUGGUG- -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 13185 | 0.67 | 0.727711 |
Target: 5'- cCGGugUCGAggaGGCUCaucagagcACCGccGACCGu -3' miRNA: 3'- -GCCugAGCU---UCGAG--------UGGCaaCUGGUg -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 5292 | 0.67 | 0.726639 |
Target: 5'- aGGcgauCUCGGugAGCUgCACCGaaucgugUUGGCCGCg -3' miRNA: 3'- gCCu---GAGCU--UCGA-GUGGC-------AACUGGUG- -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 44289 | 0.68 | 0.673157 |
Target: 5'- aGGGCUCcgagaGAAGCUCcucgaugUCGUcUGGCCACg -3' miRNA: 3'- gCCUGAG-----CUUCGAGu------GGCA-ACUGGUG- -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 7288 | 0.68 | 0.662082 |
Target: 5'- gGGGCUCGAGG-UCGCUGccucaauacGGCCACc -3' miRNA: 3'- gCCUGAGCUUCgAGUGGCaa-------CUGGUG- -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 23080 | 0.68 | 0.650978 |
Target: 5'- aGGuCUCGAAGaacggCcCCGUgcUGGCCACa -3' miRNA: 3'- gCCuGAGCUUCga---GuGGCA--ACUGGUG- -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 38673 | 0.68 | 0.639856 |
Target: 5'- aGGACggcggCGAAGCccUCGCCGgucuCCGCu -3' miRNA: 3'- gCCUGa----GCUUCG--AGUGGCaacuGGUG- -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 5519 | 0.69 | 0.606489 |
Target: 5'- uCGGAuCUUGggGCUCAUa---GGCCACc -3' miRNA: 3'- -GCCU-GAGCuuCGAGUGgcaaCUGGUG- -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 18252 | 0.69 | 0.595399 |
Target: 5'- aGGAgUCGAAGaaCGCgcuguccguCGUUGGCCGCu -3' miRNA: 3'- gCCUgAGCUUCgaGUG---------GCAACUGGUG- -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 34042 | 0.69 | 0.595399 |
Target: 5'- gCGGGCgaccgCGAAGCU-GCCGUagcccuccuUGGCCAg -3' miRNA: 3'- -GCCUGa----GCUUCGAgUGGCA---------ACUGGUg -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 20689 | 0.71 | 0.477283 |
Target: 5'- cCGGGCUCGAGGacaucgUCACCGgacugGGCgACu -3' miRNA: 3'- -GCCUGAGCUUCg-----AGUGGCaa---CUGgUG- -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 2638 | 0.72 | 0.427446 |
Target: 5'- cCGGGCUCuAAGUUCccGCCGUcgGGCUACg -3' miRNA: 3'- -GCCUGAGcUUCGAG--UGGCAa-CUGGUG- -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 1749 | 0.73 | 0.399064 |
Target: 5'- aGGACUCGGucaaggaccGCgUCACCG-UGACCAUc -3' miRNA: 3'- gCCUGAGCUu--------CG-AGUGGCaACUGGUG- -5' |
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1516 | 5' | -53.8 | NC_001335.1 | + | 43470 | 0.74 | 0.346054 |
Target: 5'- cCGGcGCUCGAugucacGCUCACCGUUGuACgGCc -3' miRNA: 3'- -GCC-UGAGCUu-----CGAGUGGCAAC-UGgUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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