miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1517 5' -55.9 NC_001335.1 + 31061 0.67 0.578005
Target:  5'- uCUUGCgGUUcGgcCGGCUCGGGCCGGu -3'
miRNA:   3'- -GAGUGgCAA-CauGCCGGGCCUGGUUu -5'
1517 5' -55.9 NC_001335.1 + 40959 0.68 0.545391
Target:  5'- gUCGCCGUcguUGUGCGGgCCGGugaCGu- -3'
miRNA:   3'- gAGUGGCA---ACAUGCCgGGCCug-GUuu -5'
1517 5' -55.9 NC_001335.1 + 41926 0.69 0.451929
Target:  5'- aUCAgCCGUU-UGCGGCCUGG-CCGAu -3'
miRNA:   3'- gAGU-GGCAAcAUGCCGGGCCuGGUUu -5'
1517 5' -55.9 NC_001335.1 + 7155 0.69 0.442075
Target:  5'- --gGCCGa-GUACGGCCUGGACguGAa -3'
miRNA:   3'- gagUGGCaaCAUGCCGGGCCUGguUU- -5'
1517 5' -55.9 NC_001335.1 + 7075 0.7 0.432344
Target:  5'- aUCACCGUc--GCGGCCgucagccaGGACCAGAc -3'
miRNA:   3'- gAGUGGCAacaUGCCGGg-------CCUGGUUU- -5'
1517 5' -55.9 NC_001335.1 + 32621 0.71 0.367912
Target:  5'- -cCGCCGUUGgcCGGCgCGGAuCCAc- -3'
miRNA:   3'- gaGUGGCAACauGCCGgGCCU-GGUuu -5'
1517 5' -55.9 NC_001335.1 + 43487 1.06 0.001224
Target:  5'- gCUCACCGUUGUACGGCCCGGACCAAAa -3'
miRNA:   3'- -GAGUGGCAACAUGCCGGGCCUGGUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.