miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15186 5' -49.1 NC_003790.1 + 3747 0.66 0.4063
Target:  5'- --cAGuCCACCaaagaAGggGGUccAGCCCa -3'
miRNA:   3'- ucuUC-GGUGGaaaa-UCuuCCA--UCGGG- -5'
15186 5' -49.1 NC_003790.1 + 78 0.66 0.394973
Target:  5'- -uGAGCagugaaaGCC-UUUGGggGGcgAGCCCc -3'
miRNA:   3'- ucUUCGg------UGGaAAAUCuuCCa-UCGGG- -5'
15186 5' -49.1 NC_003790.1 + 5538 0.73 0.12891
Target:  5'- uGggGCUACCUUcUAaAAGGUGGCUUc -3'
miRNA:   3'- uCuuCGGUGGAAaAUcUUCCAUCGGG- -5'
15186 5' -49.1 NC_003790.1 + 5572 1.12 0.000119
Target:  5'- cAGAAGCCACCUUUUAGAAGGUAGCCCc -3'
miRNA:   3'- -UCUUCGGUGGAAAAUCUUCCAUCGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.