Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1519 | 3' | -56.4 | NC_001335.1 | + | 7571 | 0.66 | 0.615513 |
Target: 5'- -gUGuCGGCCGgcGCuuccagCGCGUCguacauCAUCCCg -3' miRNA: 3'- aaAC-GCUGGCuuCG------GCGCAG------GUAGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 23258 | 0.66 | 0.611117 |
Target: 5'- -gUGCccuGGCCGAGGuuGCGguuacgagccuggCCuUCCCa -3' miRNA: 3'- aaACG---CUGGCUUCggCGCa------------GGuAGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 31746 | 0.67 | 0.539427 |
Target: 5'- --cGCuGGCaCGAGGCCGCGgaugCCGagaUCCg -3' miRNA: 3'- aaaCG-CUG-GCUUCGGCGCa---GGU---AGGg -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 17230 | 0.68 | 0.518219 |
Target: 5'- -cUGCGACCu-GGCCGagggCCGUCgCCa -3' miRNA: 3'- aaACGCUGGcuUCGGCgca-GGUAG-GG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 19515 | 0.68 | 0.493222 |
Target: 5'- --aGCGACC-AGGCCGCGcaggcggaagucgCCAUCgCg -3' miRNA: 3'- aaaCGCUGGcUUCGGCGCa------------GGUAGgG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 48898 | 0.7 | 0.390437 |
Target: 5'- --gGCuGACCGGAGaagcuaCCGCGUCCgGUCgCCg -3' miRNA: 3'- aaaCG-CUGGCUUC------GGCGCAGG-UAG-GG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 1168 | 0.71 | 0.363983 |
Target: 5'- --cGgGACCGggGCCGCcUUUAcuUCCCc -3' miRNA: 3'- aaaCgCUGGCuuCGGCGcAGGU--AGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 42783 | 0.71 | 0.338796 |
Target: 5'- gUUUGCccaaGCgGAGGCCGUGcgUCAUCCCg -3' miRNA: 3'- -AAACGc---UGgCUUCGGCGCa-GGUAGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 2853 | 0.66 | 0.648511 |
Target: 5'- -gUGCGGCCGucguGGCUuagauCGcCCAUCUCg -3' miRNA: 3'- aaACGCUGGCu---UCGGc----GCaGGUAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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