Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1519 | 3' | -56.4 | NC_001335.1 | + | 1168 | 0.71 | 0.363983 |
Target: 5'- --cGgGACCGggGCCGCcUUUAcuUCCCc -3' miRNA: 3'- aaaCgCUGGCuuCGGCGcAGGU--AGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 2853 | 0.66 | 0.648511 |
Target: 5'- -gUGCGGCCGucguGGCUuagauCGcCCAUCUCg -3' miRNA: 3'- aaACGCUGGCu---UCGGc----GCaGGUAGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 3007 | 0.8 | 0.083636 |
Target: 5'- --gGUGACCGAcGCCGCGUCCGaCUCg -3' miRNA: 3'- aaaCGCUGGCUuCGGCGCAGGUaGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 3115 | 0.66 | 0.637513 |
Target: 5'- --aGCGGCgGGAGCUGaugGUCC--CCCg -3' miRNA: 3'- aaaCGCUGgCUUCGGCg--CAGGuaGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 7571 | 0.66 | 0.615513 |
Target: 5'- -gUGuCGGCCGgcGCuuccagCGCGUCguacauCAUCCCg -3' miRNA: 3'- aaAC-GCUGGCuuCG------GCGCAG------GUAGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 8522 | 0.71 | 0.363983 |
Target: 5'- --cGcCGGCCaGAGGCCaucgGCGUcaCCGUCCCg -3' miRNA: 3'- aaaC-GCUGG-CUUCGG----CGCA--GGUAGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 11227 | 0.66 | 0.615513 |
Target: 5'- --cGCGGCgGuAAGCCGC--CgAUCCCg -3' miRNA: 3'- aaaCGCUGgC-UUCGGCGcaGgUAGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 12930 | 0.69 | 0.456812 |
Target: 5'- --aGCGACCGAcaCCGCGccccgauugUCUAUCCg -3' miRNA: 3'- aaaCGCUGGCUucGGCGC---------AGGUAGGg -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 14474 | 0.66 | 0.62651 |
Target: 5'- -gUGUGGCCGAcGCU-CGUCCAaCCg -3' miRNA: 3'- aaACGCUGGCUuCGGcGCAGGUaGGg -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 15962 | 0.7 | 0.407828 |
Target: 5'- -aUGCagccaaGACCGAAGCUgccaaggGCGUUCAcgUCCCg -3' miRNA: 3'- aaACG------CUGGCUUCGG-------CGCAGGU--AGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 17230 | 0.68 | 0.518219 |
Target: 5'- -cUGCGACCu-GGCCGagggCCGUCgCCa -3' miRNA: 3'- aaACGCUGGcuUCGGCgca-GGUAG-GG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 19515 | 0.68 | 0.493222 |
Target: 5'- --aGCGACC-AGGCCGCGcaggcggaagucgCCAUCgCg -3' miRNA: 3'- aaaCGCUGGcUUCGGCGCa------------GGUAGgG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 22468 | 0.66 | 0.615513 |
Target: 5'- -cUGCauUCGAGGCUGCGgucugcagccacUCCAUCUCa -3' miRNA: 3'- aaACGcuGGCUUCGGCGC------------AGGUAGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 23258 | 0.66 | 0.611117 |
Target: 5'- -gUGCccuGGCCGAGGuuGCGguuacgagccuggCCuUCCCa -3' miRNA: 3'- aaACG---CUGGCUUCggCGCa------------GGuAGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 25204 | 0.67 | 0.59357 |
Target: 5'- --cGCGAgCC-AGGCUucgGCGUCCAUCUUg -3' miRNA: 3'- aaaCGCU-GGcUUCGG---CGCAGGUAGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 29836 | 0.75 | 0.182744 |
Target: 5'- cUUGCaGACCcucgcgguGAAGaUCGUGUCCAUCCCg -3' miRNA: 3'- aAACG-CUGG--------CUUC-GGCGCAGGUAGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 30582 | 0.7 | 0.418115 |
Target: 5'- gUUGCcGCCGAAGUCGUGgcugaCCAagCCCu -3' miRNA: 3'- aAACGcUGGCUUCGGCGCa----GGUa-GGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 31746 | 0.67 | 0.539427 |
Target: 5'- --cGCuGGCaCGAGGCCGCGgaugCCGagaUCCg -3' miRNA: 3'- aaaCG-CUG-GCUUCGGCGCa---GGU---AGGg -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 32842 | 0.72 | 0.292299 |
Target: 5'- --aGCaGCCGAGGCCGuCGUcaCCGUCgCCg -3' miRNA: 3'- aaaCGcUGGCUUCGGC-GCA--GGUAG-GG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 33852 | 0.67 | 0.582643 |
Target: 5'- -aUGUGGCCGAGGuuGCa--CGgcUCCCa -3' miRNA: 3'- aaACGCUGGCUUCggCGcagGU--AGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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