Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1519 | 3' | -56.4 | NC_001335.1 | + | 8522 | 0.71 | 0.363983 |
|
Target: 5'- --cGcCGGCCaGAGGCCaucgGCGUcaCCGUCCCg -3' miRNA: 3'- aaaC-GCUGG-CUUCGG----CGCA--GGUAGGG- -5' |
|||||||
| 1519 | 3' | -56.4 | NC_001335.1 | + | 1168 | 0.71 | 0.363983 |
|
Target: 5'- --cGgGACCGggGCCGCcUUUAcuUCCCc -3' miRNA: 3'- aaaCgCUGGCuuCGGCGcAGGU--AGGG- -5' |
|||||||
| 1519 | 3' | -56.4 | NC_001335.1 | + | 49974 | 0.71 | 0.338796 |
|
Target: 5'- -gUGgGGCUGAAGaaGUcUCCAUCCCa -3' miRNA: 3'- aaACgCUGGCUUCggCGcAGGUAGGG- -5' |
|||||||
| 1519 | 3' | -56.4 | NC_001335.1 | + | 42783 | 0.71 | 0.338796 |
|
Target: 5'- gUUUGCccaaGCgGAGGCCGUGcgUCAUCCCg -3' miRNA: 3'- -AAACGc---UGgCUUCGGCGCa-GGUAGGG- -5' |
|||||||
| 1519 | 3' | -56.4 | NC_001335.1 | + | 32842 | 0.72 | 0.292299 |
|
Target: 5'- --aGCaGCCGAGGCCGuCGUcaCCGUCgCCg -3' miRNA: 3'- aaaCGcUGGCUUCGGC-GCA--GGUAG-GG- -5' |
|||||||
| 1519 | 3' | -56.4 | NC_001335.1 | + | 42339 | 0.75 | 0.192848 |
|
Target: 5'- --gGcCGACCGGcgcgAGCCGCGUgCGUCUCg -3' miRNA: 3'- aaaC-GCUGGCU----UCGGCGCAgGUAGGG- -5' |
|||||||
| 1519 | 3' | -56.4 | NC_001335.1 | + | 29836 | 0.75 | 0.182744 |
|
Target: 5'- cUUGCaGACCcucgcgguGAAGaUCGUGUCCAUCCCg -3' miRNA: 3'- aAACG-CUGG--------CUUC-GGCGCAGGUAGGG- -5' |
|||||||
| 1519 | 3' | -56.4 | NC_001335.1 | + | 3007 | 0.8 | 0.083636 |
|
Target: 5'- --gGUGACCGAcGCCGCGUCCGaCUCg -3' miRNA: 3'- aaaCGCUGGCUuCGGCGCAGGUaGGG- -5' |
|||||||
| 1519 | 3' | -56.4 | NC_001335.1 | + | 45687 | 1.09 | 0.000666 |
|
Target: 5'- aUUUGCGACCGAAGCCGCGUCCAUCCCu -3' miRNA: 3'- -AAACGCUGGCUUCGGCGCAGGUAGGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home