miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1519 5' -59.5 NC_001335.1 + 19283 0.66 0.450521
Target:  5'- -cGGCUcacgaGGcCGUGGUCGcGCUGCUGGg -3'
miRNA:   3'- acCCGAa----CC-GCACCGGCuUGACGGUC- -5'
1519 5' -59.5 NC_001335.1 + 27170 0.66 0.440862
Target:  5'- aGGGU--GGCGgcaaGGCCGAugaugGCUGCUg- -3'
miRNA:   3'- aCCCGaaCCGCa---CCGGCU-----UGACGGuc -5'
1519 5' -59.5 NC_001335.1 + 5944 0.67 0.416312
Target:  5'- cGGGUcgGGC-UGGCCugugccguggacgguGAACaGCCAGg -3'
miRNA:   3'- aCCCGaaCCGcACCGG---------------CUUGaCGGUC- -5'
1519 5' -59.5 NC_001335.1 + 17775 0.67 0.412611
Target:  5'- cGGGCcaaGGaucuCGcGGCUGAGCUGuCCAGg -3'
miRNA:   3'- aCCCGaa-CC----GCaCCGGCUUGAC-GGUC- -5'
1519 5' -59.5 NC_001335.1 + 51850 0.67 0.394409
Target:  5'- cGGGCacguagUGagcagccuauGCGcGGCaCGGGCUGCCGGg -3'
miRNA:   3'- aCCCGa-----AC----------CGCaCCG-GCUUGACGGUC- -5'
1519 5' -59.5 NC_001335.1 + 14480 0.67 0.394409
Target:  5'- -cGGC-UGGUGUGGCCGAcGCUcGuCCAa -3'
miRNA:   3'- acCCGaACCGCACCGGCU-UGA-C-GGUc -5'
1519 5' -59.5 NC_001335.1 + 38354 0.67 0.385505
Target:  5'- cGGGC-UGGCc-GGCCGAGCggaacuaaGCCGu -3'
miRNA:   3'- aCCCGaACCGcaCCGGCUUGa-------CGGUc -5'
1519 5' -59.5 NC_001335.1 + 13781 0.67 0.3681
Target:  5'- -cGGC---GCGUGGCCGAACUcaagcGCCAa -3'
miRNA:   3'- acCCGaacCGCACCGGCUUGA-----CGGUc -5'
1519 5' -59.5 NC_001335.1 + 46303 0.7 0.268515
Target:  5'- cGGGCUgaugaaGGCGUGGCaCGucguuCUGCUg- -3'
miRNA:   3'- aCCCGAa-----CCGCACCG-GCuu---GACGGuc -5'
1519 5' -59.5 NC_001335.1 + 16472 0.7 0.255279
Target:  5'- gGGGUgaucGCGgucagcaucgGGCCGAGCUGCUGGa -3'
miRNA:   3'- aCCCGaac-CGCa---------CCGGCUUGACGGUC- -5'
1519 5' -59.5 NC_001335.1 + 45721 1.08 0.000372
Target:  5'- aUGGGCUUGGCGUGGCCGAACUGCCAGu -3'
miRNA:   3'- -ACCCGAACCGCACCGGCUUGACGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.