miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
152 3' -57.4 AC_000006.1 + 12747 0.66 0.468354
Target:  5'- cAGgAUGcGCUCCUCCU-CGGCCGa-- -3'
miRNA:   3'- -UCgUAUaUGGGGAGGAcGCCGGCagg -5'
152 3' -57.4 AC_000006.1 + 16859 0.66 0.458162
Target:  5'- cGCAUGgcCCgCCgCCgGCGGCgGUUCa -3'
miRNA:   3'- uCGUAUauGG-GGaGGaCGCCGgCAGG- -5'
152 3' -57.4 AC_000006.1 + 17566 0.67 0.41288
Target:  5'- uGCAgc--CCCCUCCgGUGGCgaccgccgugcgccgCGUCCc -3'
miRNA:   3'- uCGUauauGGGGAGGaCGCCG---------------GCAGG- -5'
152 3' -57.4 AC_000006.1 + 20804 0.68 0.372247
Target:  5'- gAGCcaGUGCaCgCCUCCggucucGCGGCCGgCCg -3'
miRNA:   3'- -UCGuaUAUG-G-GGAGGa-----CGCCGGCaGG- -5'
152 3' -57.4 AC_000006.1 + 15145 0.68 0.3634
Target:  5'- cAGCAgc-ACCCCgUCCgcguccGCGGCCacuUCCg -3'
miRNA:   3'- -UCGUauaUGGGG-AGGa-----CGCCGGc--AGG- -5'
152 3' -57.4 AC_000006.1 + 12806 0.69 0.313429
Target:  5'- uAGCAUGUACgCCgCCaacCGGCCGUUUa -3'
miRNA:   3'- -UCGUAUAUGgGGaGGac-GCCGGCAGG- -5'
152 3' -57.4 AC_000006.1 + 10577 0.7 0.247878
Target:  5'- cGGCGggGUGaccaaguCCCgCUCgCcGCGGCCGUCCg -3'
miRNA:   3'- -UCGUa-UAU-------GGG-GAG-GaCGCCGGCAGG- -5'
152 3' -57.4 AC_000006.1 + 17496 0.71 0.222849
Target:  5'- gGGCAUGccgGCCuucacggCCUCCUcguacgaagGCGGCuCGUCCa -3'
miRNA:   3'- -UCGUAUa--UGG-------GGAGGA---------CGCCG-GCAGG- -5'
152 3' -57.4 AC_000006.1 + 4900 0.72 0.189883
Target:  5'- gGGCGgggACCgCCUCCUcgGCGaGCuCGUCCg -3'
miRNA:   3'- -UCGUauaUGG-GGAGGA--CGC-CG-GCAGG- -5'
152 3' -57.4 AC_000006.1 + 16821 0.72 0.179718
Target:  5'- uGCc-AUGCCUCUCCUGCGGCgGgaucuUCCu -3'
miRNA:   3'- uCGuaUAUGGGGAGGACGCCGgC-----AGG- -5'
152 3' -57.4 AC_000006.1 + 33213 1.11 0.000226
Target:  5'- cAGCAUAUACCCCUCCUGCGGCCGUCCu -3'
miRNA:   3'- -UCGUAUAUGGGGAGGACGCCGGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.