miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1521 5' -53.6 NC_001335.1 + 5948 0.66 0.780268
Target:  5'- cGAGCG-GGUCgGGCUgGCCUgugccguggACGGUGa -3'
miRNA:   3'- -UUCGCuCUAG-UCGAgCGGA---------UGCUACg -5'
1521 5' -53.6 NC_001335.1 + 40946 0.66 0.780268
Target:  5'- --aCGGGAUCGGCUUGUCgccguCGuuGUGCg -3'
miRNA:   3'- uucGCUCUAGUCGAGCGGau---GC--UACG- -5'
1521 5' -53.6 NC_001335.1 + 38757 0.66 0.780268
Target:  5'- cAAGUucGAGA-CAGCUUgucaGCCUcgacuggaGCGAUGCg -3'
miRNA:   3'- -UUCG--CUCUaGUCGAG----CGGA--------UGCUACG- -5'
1521 5' -53.6 NC_001335.1 + 48391 0.66 0.75946
Target:  5'- --cCGAGuaccaCGGCUUGCCcucGCGGUGCg -3'
miRNA:   3'- uucGCUCua---GUCGAGCGGa--UGCUACG- -5'
1521 5' -53.6 NC_001335.1 + 15290 0.66 0.748843
Target:  5'- -cGUGGcGAUCAGCcggaaCGCCUugGCGAUGa -3'
miRNA:   3'- uuCGCU-CUAGUCGa----GCGGA--UGCUACg -5'
1521 5' -53.6 NC_001335.1 + 14292 0.66 0.7381
Target:  5'- -uGCGGcGGUCGGCUaCGUgUACGucgGUGCu -3'
miRNA:   3'- uuCGCU-CUAGUCGA-GCGgAUGC---UACG- -5'
1521 5' -53.6 NC_001335.1 + 37785 0.66 0.727244
Target:  5'- cAGC-AGAgCAGCuUUGcCCUGCGAUGUg -3'
miRNA:   3'- uUCGcUCUaGUCG-AGC-GGAUGCUACG- -5'
1521 5' -53.6 NC_001335.1 + 2288 0.67 0.694124
Target:  5'- cAGCGAGGUCgaGGCugaacuUCGCC-GCGAggucgGCa -3'
miRNA:   3'- uUCGCUCUAG--UCG------AGCGGaUGCUa----CG- -5'
1521 5' -53.6 NC_001335.1 + 26936 0.67 0.682941
Target:  5'- uGGCGAucucgCGGCuUCGCCUACGAg-- -3'
miRNA:   3'- uUCGCUcua--GUCG-AGCGGAUGCUacg -5'
1521 5' -53.6 NC_001335.1 + 43709 0.69 0.59259
Target:  5'- -uGCGAGc-CAGCUuguaCGCCUGCGG-GCa -3'
miRNA:   3'- uuCGCUCuaGUCGA----GCGGAUGCUaCG- -5'
1521 5' -53.6 NC_001335.1 + 11305 0.69 0.581349
Target:  5'- cAGCGGGAUCGGCg-GCUUACcGccGCg -3'
miRNA:   3'- uUCGCUCUAGUCGagCGGAUG-CuaCG- -5'
1521 5' -53.6 NC_001335.1 + 31488 0.69 0.570151
Target:  5'- uGGGUGucuaGGAUCGGCUCGCCagccACGAcGUg -3'
miRNA:   3'- -UUCGC----UCUAGUCGAGCGGa---UGCUaCG- -5'
1521 5' -53.6 NC_001335.1 + 20574 0.7 0.536914
Target:  5'- --aCGAGGUCAGCaggUCGCCacCGAUGUu -3'
miRNA:   3'- uucGCUCUAGUCG---AGCGGauGCUACG- -5'
1521 5' -53.6 NC_001335.1 + 4086 0.72 0.422309
Target:  5'- cGGCGAGG-CAGC-CGgCgGCGAUGCa -3'
miRNA:   3'- uUCGCUCUaGUCGaGCgGaUGCUACG- -5'
1521 5' -53.6 NC_001335.1 + 39393 0.75 0.273269
Target:  5'- cGAGCGGGGUCAGCUCGCgCUcaucguccucaccgaAgucgaacuCGAUGCu -3'
miRNA:   3'- -UUCGCUCUAGUCGAGCG-GA---------------U--------GCUACG- -5'
1521 5' -53.6 NC_001335.1 + 17252 0.75 0.270424
Target:  5'- gGAGCGAGcugCAGCaccgCGCCUGCGAccugGCc -3'
miRNA:   3'- -UUCGCUCua-GUCGa---GCGGAUGCUa---CG- -5'
1521 5' -53.6 NC_001335.1 + 48226 1.09 0.001199
Target:  5'- gAAGCGAGAUCAGCUCGCCUACGAUGCc -3'
miRNA:   3'- -UUCGCUCUAGUCGAGCGGAUGCUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.