Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1523 | 3' | -52.1 | NC_001335.1 | + | 119 | 0.69 | 0.689765 |
Target: 5'- cUGUGCCGgccccuaccucugAUCGACUUgGAAaCCCGUAc -3' miRNA: 3'- aGCAUGGU-------------UAGCUGGAgCUU-GGGCAU- -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 2744 | 0.66 | 0.877316 |
Target: 5'- cUCGUuuuCCGAUUgGGCCUCGcguGCCCa-- -3' miRNA: 3'- -AGCAu--GGUUAG-CUGGAGCu--UGGGcau -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 3215 | 0.67 | 0.83484 |
Target: 5'- cUCGgcaacCCAcUCGACCUCGAgaugcucuGCCUGg- -3' miRNA: 3'- -AGCau---GGUuAGCUGGAGCU--------UGGGCau -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 6344 | 0.66 | 0.852561 |
Target: 5'- -gGUucuCCAGUCGGuCCUCGAggauGCCCa-- -3' miRNA: 3'- agCAu--GGUUAGCU-GGAGCU----UGGGcau -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 7209 | 0.74 | 0.421235 |
Target: 5'- cCGUAUUGAggcagCGACCUCGAGCCCc-- -3' miRNA: 3'- aGCAUGGUUa----GCUGGAGCUUGGGcau -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 7914 | 0.69 | 0.701933 |
Target: 5'- gUCGUuggACU--UCGACCcgUCGAACCCGa- -3' miRNA: 3'- -AGCA---UGGuuAGCUGG--AGCUUGGGCau -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 8250 | 0.69 | 0.734636 |
Target: 5'- gUCGUGCCAGaccUCGcCCUCaaGGACCgCGUc -3' miRNA: 3'- -AGCAUGGUU---AGCuGGAG--CUUGG-GCAu -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 9040 | 0.68 | 0.766373 |
Target: 5'- cCGaACCGGaccCGGCuCUCGGACCUGUAc -3' miRNA: 3'- aGCaUGGUUa--GCUG-GAGCUUGGGCAU- -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 9674 | 0.66 | 0.843817 |
Target: 5'- uUCGUGgCugcGUCGGCCUUG-GCCgCGUAg -3' miRNA: 3'- -AGCAUgGu--UAGCUGGAGCuUGG-GCAU- -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 12323 | 0.68 | 0.745339 |
Target: 5'- gUCGUugCAGuggaaggcguacUCGGCCUCG-ACUCGg- -3' miRNA: 3'- -AGCAugGUU------------AGCUGGAGCuUGGGCau -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 13579 | 0.66 | 0.877316 |
Target: 5'- aCGUACCGGgccgCGACCUUGuuCgCGUu -3' miRNA: 3'- aGCAUGGUUa---GCUGGAGCuuGgGCAu -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 14543 | 0.67 | 0.796814 |
Target: 5'- uUC-UGCCAGgagcccUUGACCUCGGACUCGc- -3' miRNA: 3'- -AGcAUGGUU------AGCUGGAGCUUGGGCau -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 17093 | 0.7 | 0.634926 |
Target: 5'- gUCGUGCCGAUcaacguagCGACCugagucaggaUCGGACCCa-- -3' miRNA: 3'- -AGCAUGGUUA--------GCUGG----------AGCUUGGGcau -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 20767 | 0.66 | 0.869319 |
Target: 5'- -aGU-CCGGUgaCGAuguCCUCGAGCCCGg- -3' miRNA: 3'- agCAuGGUUA--GCU---GGAGCUUGGGCau -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 20967 | 0.73 | 0.460959 |
Target: 5'- aCGUGCCGAcgCGAUCUCcGAuccagcaguGCCCGUAg -3' miRNA: 3'- aGCAUGGUUa-GCUGGAG-CU---------UGGGCAU- -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 21808 | 0.68 | 0.766373 |
Target: 5'- aCGagUCGAUCaACCUCGAGCgCCGUGa -3' miRNA: 3'- aGCauGGUUAGcUGGAGCUUG-GGCAU- -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 26595 | 0.69 | 0.734636 |
Target: 5'- cCGaGCCGAaCGGCCUUGAGCCgGc- -3' miRNA: 3'- aGCaUGGUUaGCUGGAGCUUGGgCau -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 31684 | 0.7 | 0.631553 |
Target: 5'- cUCGUGCCAGcgGGCCUUGAugacguaccgccacGCCCGa- -3' miRNA: 3'- -AGCAUGGUUagCUGGAGCU--------------UGGGCau -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 32206 | 0.67 | 0.83484 |
Target: 5'- cUGcUACCGGUCGuuccACCgacCGAACCCGg- -3' miRNA: 3'- aGC-AUGGUUAGC----UGGa--GCUUGGGCau -5' |
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1523 | 3' | -52.1 | NC_001335.1 | + | 32226 | 0.7 | 0.646164 |
Target: 5'- uUCGaAgUcAUCGACCUCGAAUCCGa- -3' miRNA: 3'- -AGCaUgGuUAGCUGGAGCUUGGGCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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