miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1523 5' -57.2 NC_001335.1 + 11866 0.66 0.610259
Target:  5'- aGCGAGaCCUCcuuGGUGGUCuGcGCuAGGa -3'
miRNA:   3'- gCGUUC-GGAGcu-CCACCAG-CuCG-UCC- -5'
1523 5' -57.2 NC_001335.1 + 1624 0.66 0.59944
Target:  5'- aCGCGcccuCCUCGAGGacgccUGGuUCGGcGCAGGc -3'
miRNA:   3'- -GCGUuc--GGAGCUCC-----ACC-AGCU-CGUCC- -5'
1523 5' -57.2 NC_001335.1 + 22101 0.66 0.59944
Target:  5'- gGC-AGCUUCaGcAGGUGcucuUCGAGCAGGc -3'
miRNA:   3'- gCGuUCGGAG-C-UCCACc---AGCUCGUCC- -5'
1523 5' -57.2 NC_001335.1 + 5560 0.67 0.556513
Target:  5'- aGCAGuGCCggggCGGcGGUGc-CGAGCAGGu -3'
miRNA:   3'- gCGUU-CGGa---GCU-CCACcaGCUCGUCC- -5'
1523 5' -57.2 NC_001335.1 + 21957 0.67 0.535371
Target:  5'- gCGCcgauGGCCUCuaguGGGuUGGUgGGGUAGGu -3'
miRNA:   3'- -GCGu---UCGGAGc---UCC-ACCAgCUCGUCC- -5'
1523 5' -57.2 NC_001335.1 + 5955 0.68 0.514517
Target:  5'- -cCAGGCC-CGAGcG-GGUCGGGCuGGc -3'
miRNA:   3'- gcGUUCGGaGCUC-CaCCAGCUCGuCC- -5'
1523 5' -57.2 NC_001335.1 + 15089 0.68 0.473868
Target:  5'- gGCcagaAGGCCcgCGAagcGGUGGUCGAGguGu -3'
miRNA:   3'- gCG----UUCGGa-GCU---CCACCAGCUCguCc -5'
1523 5' -57.2 NC_001335.1 + 48441 0.69 0.425443
Target:  5'- uGCAAGCCUUgGAGGgagacuucaagGGUCGAGUc-- -3'
miRNA:   3'- gCGUUCGGAG-CUCCa----------CCAGCUCGucc -5'
1523 5' -57.2 NC_001335.1 + 34625 0.69 0.406914
Target:  5'- gGguAGCCuUCGAGGUaguGGuUCGAGUAGu -3'
miRNA:   3'- gCguUCGG-AGCUCCA---CC-AGCUCGUCc -5'
1523 5' -57.2 NC_001335.1 + 40171 0.7 0.388899
Target:  5'- cCGCAAGCCUCGc-GUGaUCGAGaccaAGGu -3'
miRNA:   3'- -GCGUUCGGAGCucCACcAGCUCg---UCC- -5'
1523 5' -57.2 NC_001335.1 + 11341 0.7 0.371415
Target:  5'- aGCGgccuugauGGCCUCGAGGaucgGGUCaccguucAGCGGGa -3'
miRNA:   3'- gCGU--------UCGGAGCUCCa---CCAGc------UCGUCC- -5'
1523 5' -57.2 NC_001335.1 + 3929 0.7 0.354475
Target:  5'- aGCAAgGCCgucucaGucacGGUGGUCGAGcCAGGa -3'
miRNA:   3'- gCGUU-CGGag----Cu---CCACCAGCUC-GUCC- -5'
1523 5' -57.2 NC_001335.1 + 48784 1.11 0.000496
Target:  5'- gCGCAAGCCUCGAGGUGGUCGAGCAGGa -3'
miRNA:   3'- -GCGUUCGGAGCUCCACCAGCUCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.