Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1525 | 3' | -52.2 | NC_001335.1 | + | 41487 | 0.66 | 0.861473 |
Target: 5'- --cCAGACCGGGGGuagcggAUCcc-CCGCCGa -3' miRNA: 3'- acaGUUUGGCCUCU------UAGaacGGCGGC- -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 39216 | 0.66 | 0.861473 |
Target: 5'- gGUacc-CCGGAGAccUCUUcGCCGCCc -3' miRNA: 3'- aCAguuuGGCCUCUu-AGAA-CGGCGGc -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 45992 | 0.66 | 0.844171 |
Target: 5'- ---aGAAUCGG-GA--CUUGCCGCCGu -3' miRNA: 3'- acagUUUGGCCuCUuaGAACGGCGGC- -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 1729 | 0.66 | 0.844171 |
Target: 5'- --gUAGAUCGGGGGAacCUUGCCugcGCCGa -3' miRNA: 3'- acaGUUUGGCCUCUUa-GAACGG---CGGC- -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 29427 | 0.67 | 0.825933 |
Target: 5'- aUGUCGAucACCGGcaucccggcgcAGAcgC-UGCCGUCGu -3' miRNA: 3'- -ACAGUU--UGGCC-----------UCUuaGaACGGCGGC- -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 9283 | 0.67 | 0.825933 |
Target: 5'- cGUCuGGCCGGucucGGAGUCga--CGCCGa -3' miRNA: 3'- aCAGuUUGGCC----UCUUAGaacgGCGGC- -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 29590 | 0.67 | 0.814573 |
Target: 5'- cGaCAAGCUGGucGAAgauggcaacgagCUUGCCGCCa -3' miRNA: 3'- aCaGUUUGGCCu-CUUa-----------GAACGGCGGc -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 24584 | 0.67 | 0.796994 |
Target: 5'- cGUCAcaggacgcuucGACCGGAcGGUCUUGgCGuuGc -3' miRNA: 3'- aCAGU-----------UUGGCCUcUUAGAACgGCggC- -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 37400 | 0.67 | 0.786971 |
Target: 5'- cGUCGAGuucaccCCGGAGGA-CgugGCCGUCa -3' miRNA: 3'- aCAGUUU------GGCCUCUUaGaa-CGGCGGc -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 18867 | 0.68 | 0.776777 |
Target: 5'- gGUCGAACCGGGugucGGUCUUGgUcuugGCCGa -3' miRNA: 3'- aCAGUUUGGCCUc---UUAGAACgG----CGGC- -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 38752 | 0.68 | 0.75593 |
Target: 5'- ---gAGACCGGcGAGggCUUcGCCGCCGu -3' miRNA: 3'- acagUUUGGCCuCUUa-GAA-CGGCGGC- -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 22310 | 0.68 | 0.745301 |
Target: 5'- cGUCGAucaacguCUGGGGGAUCUcGCCgaugaccucgGCCGg -3' miRNA: 3'- aCAGUUu------GGCCUCUUAGAaCGG----------CGGC- -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 31882 | 0.68 | 0.734551 |
Target: 5'- cGUCAaccggcuggcuGACCGGGG---CUUGCCGCg- -3' miRNA: 3'- aCAGU-----------UUGGCCUCuuaGAACGGCGgc -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 1623 | 0.69 | 0.701701 |
Target: 5'- aGUCGA-CCGGAgucGAGUag-GUCGCCGa -3' miRNA: 3'- aCAGUUuGGCCU---CUUAgaaCGGCGGC- -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 40689 | 0.71 | 0.555882 |
Target: 5'- cGUCGcAUCGGAGAacGUCagcaagGCCGCUGa -3' miRNA: 3'- aCAGUuUGGCCUCU--UAGaa----CGGCGGC- -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 3476 | 0.72 | 0.501519 |
Target: 5'- aGUCGAugGCCGGGGuGUUggUGCCGuuGa -3' miRNA: 3'- aCAGUU--UGGCCUCuUAGa-ACGGCggC- -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 11267 | 0.74 | 0.429699 |
Target: 5'- gGUCGAACgcaGGAcucgGggUCUUGuuGCCGa -3' miRNA: 3'- aCAGUUUGg--CCU----CuuAGAACggCGGC- -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 13932 | 0.84 | 0.098613 |
Target: 5'- gGUCuGACCGGAGGAUCgggGCCGCUa -3' miRNA: 3'- aCAGuUUGGCCUCUUAGaa-CGGCGGc -5' |
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1525 | 3' | -52.2 | NC_001335.1 | + | 51536 | 1.1 | 0.001596 |
Target: 5'- cUGUCAAACCGGAGAAUCUUGCCGCCGg -3' miRNA: 3'- -ACAGUUUGGCCUCUUAGAACGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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