miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1525 3' -52.2 NC_001335.1 + 41487 0.66 0.861473
Target:  5'- --cCAGACCGGGGGuagcggAUCcc-CCGCCGa -3'
miRNA:   3'- acaGUUUGGCCUCU------UAGaacGGCGGC- -5'
1525 3' -52.2 NC_001335.1 + 39216 0.66 0.861473
Target:  5'- gGUacc-CCGGAGAccUCUUcGCCGCCc -3'
miRNA:   3'- aCAguuuGGCCUCUu-AGAA-CGGCGGc -5'
1525 3' -52.2 NC_001335.1 + 45992 0.66 0.844171
Target:  5'- ---aGAAUCGG-GA--CUUGCCGCCGu -3'
miRNA:   3'- acagUUUGGCCuCUuaGAACGGCGGC- -5'
1525 3' -52.2 NC_001335.1 + 1729 0.66 0.844171
Target:  5'- --gUAGAUCGGGGGAacCUUGCCugcGCCGa -3'
miRNA:   3'- acaGUUUGGCCUCUUa-GAACGG---CGGC- -5'
1525 3' -52.2 NC_001335.1 + 29427 0.67 0.825933
Target:  5'- aUGUCGAucACCGGcaucccggcgcAGAcgC-UGCCGUCGu -3'
miRNA:   3'- -ACAGUU--UGGCC-----------UCUuaGaACGGCGGC- -5'
1525 3' -52.2 NC_001335.1 + 9283 0.67 0.825933
Target:  5'- cGUCuGGCCGGucucGGAGUCga--CGCCGa -3'
miRNA:   3'- aCAGuUUGGCC----UCUUAGaacgGCGGC- -5'
1525 3' -52.2 NC_001335.1 + 29590 0.67 0.814573
Target:  5'- cGaCAAGCUGGucGAAgauggcaacgagCUUGCCGCCa -3'
miRNA:   3'- aCaGUUUGGCCu-CUUa-----------GAACGGCGGc -5'
1525 3' -52.2 NC_001335.1 + 24584 0.67 0.796994
Target:  5'- cGUCAcaggacgcuucGACCGGAcGGUCUUGgCGuuGc -3'
miRNA:   3'- aCAGU-----------UUGGCCUcUUAGAACgGCggC- -5'
1525 3' -52.2 NC_001335.1 + 37400 0.67 0.786971
Target:  5'- cGUCGAGuucaccCCGGAGGA-CgugGCCGUCa -3'
miRNA:   3'- aCAGUUU------GGCCUCUUaGaa-CGGCGGc -5'
1525 3' -52.2 NC_001335.1 + 18867 0.68 0.776777
Target:  5'- gGUCGAACCGGGugucGGUCUUGgUcuugGCCGa -3'
miRNA:   3'- aCAGUUUGGCCUc---UUAGAACgG----CGGC- -5'
1525 3' -52.2 NC_001335.1 + 38752 0.68 0.75593
Target:  5'- ---gAGACCGGcGAGggCUUcGCCGCCGu -3'
miRNA:   3'- acagUUUGGCCuCUUa-GAA-CGGCGGC- -5'
1525 3' -52.2 NC_001335.1 + 22310 0.68 0.745301
Target:  5'- cGUCGAucaacguCUGGGGGAUCUcGCCgaugaccucgGCCGg -3'
miRNA:   3'- aCAGUUu------GGCCUCUUAGAaCGG----------CGGC- -5'
1525 3' -52.2 NC_001335.1 + 31882 0.68 0.734551
Target:  5'- cGUCAaccggcuggcuGACCGGGG---CUUGCCGCg- -3'
miRNA:   3'- aCAGU-----------UUGGCCUCuuaGAACGGCGgc -5'
1525 3' -52.2 NC_001335.1 + 1623 0.69 0.701701
Target:  5'- aGUCGA-CCGGAgucGAGUag-GUCGCCGa -3'
miRNA:   3'- aCAGUUuGGCCU---CUUAgaaCGGCGGC- -5'
1525 3' -52.2 NC_001335.1 + 40689 0.71 0.555882
Target:  5'- cGUCGcAUCGGAGAacGUCagcaagGCCGCUGa -3'
miRNA:   3'- aCAGUuUGGCCUCU--UAGaa----CGGCGGC- -5'
1525 3' -52.2 NC_001335.1 + 3476 0.72 0.501519
Target:  5'- aGUCGAugGCCGGGGuGUUggUGCCGuuGa -3'
miRNA:   3'- aCAGUU--UGGCCUCuUAGa-ACGGCggC- -5'
1525 3' -52.2 NC_001335.1 + 11267 0.74 0.429699
Target:  5'- gGUCGAACgcaGGAcucgGggUCUUGuuGCCGa -3'
miRNA:   3'- aCAGUUUGg--CCU----CuuAGAACggCGGC- -5'
1525 3' -52.2 NC_001335.1 + 13932 0.84 0.098613
Target:  5'- gGUCuGACCGGAGGAUCgggGCCGCUa -3'
miRNA:   3'- aCAGuUUGGCCUCUUAGaa-CGGCGGc -5'
1525 3' -52.2 NC_001335.1 + 51536 1.1 0.001596
Target:  5'- cUGUCAAACCGGAGAAUCUUGCCGCCGg -3'
miRNA:   3'- -ACAGUUUGGCCUCUUAGAACGGCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.