miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
153 3' -49.5 AC_000007.1 + 3734 0.67 0.876781
Target:  5'- -cUUGACCUacgagaccgugucuGGAACGCcguuGGAGACugCa -3'
miRNA:   3'- gaAACUGGG--------------CCUUGCGc---CUUUUGugG- -5'
153 3' -49.5 AC_000007.1 + 23433 0.67 0.887198
Target:  5'- ---aGACCUGGcuaAACGaGGA--GCACCg -3'
miRNA:   3'- gaaaCUGGGCC---UUGCgCCUuuUGUGG- -5'
153 3' -49.5 AC_000007.1 + 27989 0.67 0.887198
Target:  5'- ------aCCGGAGcCGCGGGcaAAGCACUu -3'
miRNA:   3'- gaaacugGGCCUU-GCGCCU--UUUGUGG- -5'
153 3' -49.5 AC_000007.1 + 9245 0.67 0.887198
Target:  5'- ---aGGCCaUGGAGCGCcuugaggccuuGGggGAUAUCa -3'
miRNA:   3'- gaaaCUGG-GCCUUGCG-----------CCuuUUGUGG- -5'
153 3' -49.5 AC_000007.1 + 9706 0.66 0.894874
Target:  5'- ---cGAUCCGGucGAUGCGGAcu-CGCUc -3'
miRNA:   3'- gaaaCUGGGCC--UUGCGCCUuuuGUGG- -5'
153 3' -49.5 AC_000007.1 + 26582 0.66 0.894874
Target:  5'- ----cGCUCGuGGCGCGGGcacaaGAACGCCa -3'
miRNA:   3'- gaaacUGGGCcUUGCGCCU-----UUUGUGG- -5'
153 3' -49.5 AC_000007.1 + 5470 0.66 0.897861
Target:  5'- --gUGGCCCuuGGCGCGcagcuugcccuuggaGGAGGCGCCg -3'
miRNA:   3'- gaaACUGGGccUUGCGC---------------CUUUUGUGG- -5'
153 3' -49.5 AC_000007.1 + 12109 0.66 0.90225
Target:  5'- aCUUUGACgCGG-GCGCuGAccuGCGCUg -3'
miRNA:   3'- -GAAACUGgGCCuUGCGcCUuu-UGUGG- -5'
153 3' -49.5 AC_000007.1 + 25522 0.66 0.90225
Target:  5'- ---cGGCCaCGGAGCGCucguuGAAgGCCg -3'
miRNA:   3'- gaaaCUGG-GCCUUGCGccu--UUUgUGG- -5'
153 3' -49.5 AC_000007.1 + 18965 0.66 0.909322
Target:  5'- ---cGuCUCGGuGGCGCGGGcaaacuGCACCa -3'
miRNA:   3'- gaaaCuGGGCC-UUGCGCCUuu----UGUGG- -5'
153 3' -49.5 AC_000007.1 + 25728 0.66 0.909322
Target:  5'- --gUGACCCcaaAGCgGCGGAGGGCAUUc -3'
miRNA:   3'- gaaACUGGGcc-UUG-CGCCUUUUGUGG- -5'
153 3' -49.5 AC_000007.1 + 11432 0.66 0.916086
Target:  5'- aCUUUGAgCCCGacGCGCGGAccgGGAUuaguCCc -3'
miRNA:   3'- -GAAACU-GGGCcuUGCGCCU---UUUGu---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.