miRNA: 3'- -AUAUCCUGUGG------UCCUG-UGGUGuuuau -5'
miRNA: 3'- aUAUcCUGuGGUCCUGUGGUgUUUau -5'
miRNA: 3'- auAUCCUGUGGUCCU-----------GU-GGUGUUuau -5'
miRNA: 3'- -AUAUCCUGUGGUCCUGUGGUGUUUAU- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 15318 | 3' | -49.4 | NC_003865.1 | + | 36 | 0.68 | 0.104638 |
|
Target: 5'- gUGUAGGACACCaaaaaaAGGGCgGCCAUc---- -3' miRNA: 3'- -AUAUCCUGUGG------UCCUG-UGGUGuuuau -5' |
|||||||
| 15318 | 3' | -49.4 | NC_003865.1 | + | 2525 | 0.7 | 0.065667 |
|
Target: 5'- aAUAuGAC-CCAGGACACCAgGAGg- -3' miRNA: 3'- aUAUcCUGuGGUCCUGUGGUgUUUau -5' |
|||||||
| 15318 | 3' | -49.4 | NC_003865.1 | + | 2621 | 0.71 | 0.058365 |
|
Target: 5'- -uUAGGACACCAGGGguaaauucggcCAuCCGCAAu-- -3' miRNA: 3'- auAUCCUGUGGUCCU-----------GU-GGUGUUuau -5' |
|||||||
| 15318 | 3' | -49.4 | NC_003865.1 | + | 2597 | 1.06 | 0.000054 |
|
Target: 5'- aUAUAGGACACCAGGACACCACAAAUAu -3' miRNA: 3'- -AUAUCCUGUGGUCCUGUGGUGUUUAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home