miRNA: 3'- cUCUC-GUGG----GUCUGCGCU---UGGCAacc -5'
miRNA: 3'- -CUCUCgUGGg--UC-----UGCGCU---UGGCAACC- -5'
miRNA: 3'- -CUCUCGU-------GGGUCUGcGCUUGGCaACC- -5'
miRNA: 3'- -CUCUCGUGGGUCUGCGCUUGGCAACC- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 15341 | 5' | -55 | NC_003876.1 | + | 3828 | 0.66 | 0.129252 |
|
Target: 5'- uGGAGaCACCggcaCGGGCGCGAgcgGCCGUa-- -3' miRNA: 3'- cUCUC-GUGG----GUCUGCGCU---UGGCAacc -5' |
|||||||
| 15341 | 5' | -55 | NC_003876.1 | + | 4456 | 0.68 | 0.092204 |
|
Target: 5'- aGGGAGgACCacaAGaagcuGCGCGAauuGCUGUUGGg -3' miRNA: 3'- -CUCUCgUGGg--UC-----UGCGCU---UGGCAACC- -5' |
|||||||
| 15341 | 5' | -55 | NC_003876.1 | + | 3250 | 0.72 | 0.049327 |
|
Target: 5'- cGAGAGCAauguccuUCUAGGC-CGAGCCGcUGGg -3' miRNA: 3'- -CUCUCGU-------GGGUCUGcGCUUGGCaACC- -5' |
|||||||
| 15341 | 5' | -55 | NC_003876.1 | + | 3249 | 1.09 | 3e-05 |
|
Target: 5'- gGAGAGCACCCAGACGCGAACCGUUGGc -3' miRNA: 3'- -CUCUCGUGGGUCUGCGCUUGGCAACC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home