miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1537 3' -62.9 NC_001347.2 + 21745 0.67 0.655449
Target:  5'- uACCgucggUCCUGUCUCUGCucuGCGCUaCGGCg -3'
miRNA:   3'- -UGG-----GGGGCAGAGGCGu--UGUGGgGCCG- -5'
1537 3' -62.9 NC_001347.2 + 166618 0.67 0.66487
Target:  5'- cACCgucaCgCCGUcCUCCGagaGGCGCgCCCGGCc -3'
miRNA:   3'- -UGGg---G-GGCA-GAGGCg--UUGUG-GGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 75391 0.67 0.66487
Target:  5'- cUCCCCCG-CUCCaagcgggaGCGGCGgCCgUGGCg -3'
miRNA:   3'- uGGGGGGCaGAGG--------CGUUGU-GGgGCCG- -5'
1537 3' -62.9 NC_001347.2 + 135786 0.67 0.683636
Target:  5'- gACCCcggguCCCGUCcauUCCGCGGCggguggACCgggaagCCGGCg -3'
miRNA:   3'- -UGGG-----GGGCAG---AGGCGUUG------UGG------GGCCG- -5'
1537 3' -62.9 NC_001347.2 + 114435 0.67 0.683636
Target:  5'- cGCCgCCCGUCUCaGcCAGCGCcugugucaCCCGcGCu -3'
miRNA:   3'- -UGGgGGGCAGAGgC-GUUGUG--------GGGC-CG- -5'
1537 3' -62.9 NC_001347.2 + 225497 0.67 0.683636
Target:  5'- uGCUgCCCCGgcguUCUCCagaa-GCCCCGGCg -3'
miRNA:   3'- -UGG-GGGGC----AGAGGcguugUGGGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 74025 0.67 0.683636
Target:  5'- aACCaaaggacgaCCCGUCUCCccccGCACCCgGGUu -3'
miRNA:   3'- -UGGg--------GGGCAGAGGcgu-UGUGGGgCCG- -5'
1537 3' -62.9 NC_001347.2 + 67357 0.67 0.674268
Target:  5'- aGCCgCCgCCGUCgCCGC--CGCCUCGGa -3'
miRNA:   3'- -UGG-GG-GGCAGaGGCGuuGUGGGGCCg -5'
1537 3' -62.9 NC_001347.2 + 38650 0.68 0.589417
Target:  5'- cGCCUgCCCGgcgUCUGCAGCGCCaccgucgugCCGGCc -3'
miRNA:   3'- -UGGG-GGGCag-AGGCGUUGUGG---------GGCCG- -5'
1537 3' -62.9 NC_001347.2 + 129021 0.68 0.580043
Target:  5'- gACCCUgCGUCcCCGCAcgACgACCCCGcuacaGCa -3'
miRNA:   3'- -UGGGGgGCAGaGGCGU--UG-UGGGGC-----CG- -5'
1537 3' -62.9 NC_001347.2 + 229184 0.68 0.589417
Target:  5'- aACCUCCCcuacgCggCGCGAacaGCCCCGGCc -3'
miRNA:   3'- -UGGGGGGca---GagGCGUUg--UGGGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 126848 0.68 0.598817
Target:  5'- aAUCCCCCcaCUCgGCGACcaGCCCgcaCGGCu -3'
miRNA:   3'- -UGGGGGGcaGAGgCGUUG--UGGG---GCCG- -5'
1537 3' -62.9 NC_001347.2 + 93225 0.68 0.608237
Target:  5'- aGCUCgCUGagCggcagCgGCGGCACCCCGGCu -3'
miRNA:   3'- -UGGGgGGCa-Ga----GgCGUUGUGGGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 135594 0.68 0.618618
Target:  5'- gGCCCaccuaCCGUCgucgucggccgaccgCCGCGAC-CCCCaGCc -3'
miRNA:   3'- -UGGGg----GGCAGa--------------GGCGUUGuGGGGcCG- -5'
1537 3' -62.9 NC_001347.2 + 25294 0.68 0.617674
Target:  5'- uGCCCCCCGggaUCCaaGAgACCCggcUGGCg -3'
miRNA:   3'- -UGGGGGGCag-AGGcgUUgUGGG---GCCG- -5'
1537 3' -62.9 NC_001347.2 + 1063 0.68 0.627119
Target:  5'- aACCCCgCGgg-CCGCcgGGCGCCCCuccgaguagcGGCa -3'
miRNA:   3'- -UGGGGgGCagaGGCG--UUGUGGGG----------CCG- -5'
1537 3' -62.9 NC_001347.2 + 191210 0.68 0.636567
Target:  5'- cGCCgCUCGgagCaCCGCcGCAgCCCGGCu -3'
miRNA:   3'- -UGGgGGGCa--GaGGCGuUGUgGGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 38307 0.68 0.636567
Target:  5'- cGCgCCCCCG-C-CgGCGGCGCCguaCGGCu -3'
miRNA:   3'- -UG-GGGGGCaGaGgCGUUGUGGg--GCCG- -5'
1537 3' -62.9 NC_001347.2 + 68432 0.68 0.640346
Target:  5'- aGCUCCCCGUCgcCCGUAAUgucaauagacaugaaGCCCUGcuGCg -3'
miRNA:   3'- -UGGGGGGCAGa-GGCGUUG---------------UGGGGC--CG- -5'
1537 3' -62.9 NC_001347.2 + 127793 0.69 0.570702
Target:  5'- cGCCUgcaCCGUCgCCGU-ACACCCCaGCg -3'
miRNA:   3'- -UGGGg--GGCAGaGGCGuUGUGGGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.