miRNA: 3'- uGGGGGGCAGAGGCguUg---UGGggCCG- -5'
miRNA: 3'- -UGGGg--GGCAGa----GGCGUUGUgGGGCCG- -5'
miRNA: 3'- -UGGGG-GGCAGA-GGCGU---UGUGGGGCcg -5'
miRNA: 3'- -UGGGGGGCAGAGGCGUUGUGGGGCCG- -5'
Results 61 - 64 of 64 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 1537 | 3' | -62.9 | NC_001347.2 | + | 189756 | 0.74 | 0.284966 |
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Target: 5'- cCCCCCCGUCUCCGguGaaagGCCggGGCa -3' miRNA: 3'- uGGGGGGCAGAGGCguUg---UGGggCCG- -5' |
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| 1537 | 3' | -62.9 | NC_001347.2 | + | 85994 | 0.74 | 0.284966 |
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Target: 5'- cACCCgaaCCGUCcgccgCCGCGGCG-CCCGGCa -3' miRNA: 3'- -UGGGg--GGCAGa----GGCGUUGUgGGGCCG- -5' |
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| 1537 | 3' | -62.9 | NC_001347.2 | + | 190651 | 0.75 | 0.249878 |
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Target: 5'- aACUCCaCCGUCUgCCGCGguuGCACCCCGa- -3' miRNA: 3'- -UGGGG-GGCAGA-GGCGU---UGUGGGGCcg -5' |
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| 1537 | 3' | -62.9 | NC_001347.2 | + | 229257 | 1.1 | 0.000985 |
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Target: 5'- cACCCCCCGUCUCCGCAACACCCCGGCa -3' miRNA: 3'- -UGGGGGGCAGAGGCGUUGUGGGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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