miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1537 3' -62.9 NC_001347.2 + 67357 0.67 0.674268
Target:  5'- aGCCgCCgCCGUCgCCGC--CGCCUCGGa -3'
miRNA:   3'- -UGG-GG-GGCAGaGGCGuuGUGGGGCCg -5'
1537 3' -62.9 NC_001347.2 + 68432 0.68 0.640346
Target:  5'- aGCUCCCCGUCgcCCGUAAUgucaauagacaugaaGCCCUGcuGCg -3'
miRNA:   3'- -UGGGGGGCAGa-GGCGUUG---------------UGGGGC--CG- -5'
1537 3' -62.9 NC_001347.2 + 74025 0.67 0.683636
Target:  5'- aACCaaaggacgaCCCGUCUCCccccGCACCCgGGUu -3'
miRNA:   3'- -UGGg--------GGGCAGAGGcgu-UGUGGGgCCG- -5'
1537 3' -62.9 NC_001347.2 + 75391 0.67 0.66487
Target:  5'- cUCCCCCG-CUCCaagcgggaGCGGCGgCCgUGGCg -3'
miRNA:   3'- uGGGGGGCaGAGG--------CGUUGU-GGgGCCG- -5'
1537 3' -62.9 NC_001347.2 + 85994 0.74 0.284966
Target:  5'- cACCCgaaCCGUCcgccgCCGCGGCG-CCCGGCa -3'
miRNA:   3'- -UGGGg--GGCAGa----GGCGUUGUgGGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 93225 0.68 0.608237
Target:  5'- aGCUCgCUGagCggcagCgGCGGCACCCCGGCu -3'
miRNA:   3'- -UGGGgGGCa-Ga----GgCGUUGUGGGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 109460 0.71 0.462761
Target:  5'- cGCCCCgCGUCaccggCgGCGGCGCCauGGCg -3'
miRNA:   3'- -UGGGGgGCAGa----GgCGUUGUGGggCCG- -5'
1537 3' -62.9 NC_001347.2 + 113618 0.69 0.570702
Target:  5'- gGCCUCCaCGUCgUCGCAGCGCCggCUGGa -3'
miRNA:   3'- -UGGGGG-GCAGaGGCGUUGUGG--GGCCg -5'
1537 3' -62.9 NC_001347.2 + 114103 0.69 0.570702
Target:  5'- aACCCCgCCGUC-CCGCGGguCCgcaCgGGCa -3'
miRNA:   3'- -UGGGG-GGCAGaGGCGUUguGG---GgCCG- -5'
1537 3' -62.9 NC_001347.2 + 114435 0.67 0.683636
Target:  5'- cGCCgCCCGUCUCaGcCAGCGCcugugucaCCCGcGCu -3'
miRNA:   3'- -UGGgGGGCAGAGgC-GUUGUG--------GGGC-CG- -5'
1537 3' -62.9 NC_001347.2 + 116872 0.7 0.488844
Target:  5'- aGCCCUCC-UCUUCGCcgcccgcGCGCCCCccgGGCa -3'
miRNA:   3'- -UGGGGGGcAGAGGCGu------UGUGGGG---CCG- -5'
1537 3' -62.9 NC_001347.2 + 126848 0.68 0.598817
Target:  5'- aAUCCCCCcaCUCgGCGACcaGCCCgcaCGGCu -3'
miRNA:   3'- -UGGGGGGcaGAGgCGUUG--UGGG---GCCG- -5'
1537 3' -62.9 NC_001347.2 + 127148 0.66 0.720678
Target:  5'- cGCUgCCCGUCUaCCGCGuACACCugcccaaugaCCaGCa -3'
miRNA:   3'- -UGGgGGGCAGA-GGCGU-UGUGG----------GGcCG- -5'
1537 3' -62.9 NC_001347.2 + 127793 0.69 0.570702
Target:  5'- cGCCUgcaCCGUCgCCGU-ACACCCCaGCg -3'
miRNA:   3'- -UGGGg--GGCAGaGGCGuUGUGGGGcCG- -5'
1537 3' -62.9 NC_001347.2 + 128410 0.66 0.738839
Target:  5'- cGCCCCaCGUcCUCCucuuuCAGC-CCCaCGGCg -3'
miRNA:   3'- -UGGGGgGCA-GAGGc----GUUGuGGG-GCCG- -5'
1537 3' -62.9 NC_001347.2 + 129021 0.68 0.580043
Target:  5'- gACCCUgCGUCcCCGCAcgACgACCCCGcuacaGCa -3'
miRNA:   3'- -UGGGGgGCAGaGGCGU--UG-UGGGGC-----CG- -5'
1537 3' -62.9 NC_001347.2 + 132670 0.66 0.738839
Target:  5'- uCUUgCCGUCgUCCGU--CACCCgGGCg -3'
miRNA:   3'- uGGGgGGCAG-AGGCGuuGUGGGgCCG- -5'
1537 3' -62.9 NC_001347.2 + 135123 0.66 0.702258
Target:  5'- gGCCCaCCGUCgaccCCG-AGCGCuUCCGGCc -3'
miRNA:   3'- -UGGGgGGCAGa---GGCgUUGUG-GGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 135594 0.68 0.618618
Target:  5'- gGCCCaccuaCCGUCgucgucggccgaccgCCGCGAC-CCCCaGCc -3'
miRNA:   3'- -UGGGg----GGCAGa--------------GGCGUUGuGGGGcCG- -5'
1537 3' -62.9 NC_001347.2 + 135786 0.67 0.683636
Target:  5'- gACCCcggguCCCGUCcauUCCGCGGCggguggACCgggaagCCGGCg -3'
miRNA:   3'- -UGGG-----GGGCAG---AGGCGUUG------UGG------GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.