miRNA display CGI


Results 41 - 60 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1537 3' -62.9 NC_001347.2 + 136480 0.69 0.533753
Target:  5'- gACCCuCCCG-CgggcccuggcCCGCGcauGCGCCCCGGg -3'
miRNA:   3'- -UGGG-GGGCaGa---------GGCGU---UGUGGGGCCg -5'
1537 3' -62.9 NC_001347.2 + 136529 0.69 0.552134
Target:  5'- cACCCCUCcuuauauauagGUUUUCcauGCGGCAuCCCCGGCg -3'
miRNA:   3'- -UGGGGGG-----------CAGAGG---CGUUGU-GGGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 143709 0.66 0.720678
Target:  5'- aGCUCUCCGUCgccuaUGCGGCAUCucgCCGGUg -3'
miRNA:   3'- -UGGGGGGCAGag---GCGUUGUGG---GGCCG- -5'
1537 3' -62.9 NC_001347.2 + 154122 0.67 0.645069
Target:  5'- aACCCCCCG-CUggugccaCCGCcguuguGACGgCCCGGa -3'
miRNA:   3'- -UGGGGGGCaGA-------GGCG------UUGUgGGGCCg -5'
1537 3' -62.9 NC_001347.2 + 156898 0.69 0.533753
Target:  5'- cAUCCgCCGUCUCCGCcguGCGCgCCGu- -3'
miRNA:   3'- -UGGGgGGCAGAGGCGu--UGUGgGGCcg -5'
1537 3' -62.9 NC_001347.2 + 166618 0.67 0.66487
Target:  5'- cACCgucaCgCCGUcCUCCGagaGGCGCgCCCGGCc -3'
miRNA:   3'- -UGGg---G-GGCA-GAGGCg--UUGUG-GGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 167300 0.67 0.646013
Target:  5'- cGCgCUCCGcCUCCGUGGCACCCUu-- -3'
miRNA:   3'- -UGgGGGGCaGAGGCGUUGUGGGGccg -5'
1537 3' -62.9 NC_001347.2 + 174090 0.66 0.720678
Target:  5'- aACUaa-CGUgUCCGCgGACACCCgCGGCc -3'
miRNA:   3'- -UGGgggGCAgAGGCG-UUGUGGG-GCCG- -5'
1537 3' -62.9 NC_001347.2 + 174249 0.66 0.710575
Target:  5'- gACCUCCgCGUCggucgccgccUCCGCGGC-CCguuucgacgaaauCCGGCg -3'
miRNA:   3'- -UGGGGG-GCAG----------AGGCGUUGuGG-------------GGCCG- -5'
1537 3' -62.9 NC_001347.2 + 178843 0.73 0.33068
Target:  5'- cCCCCCCGUcCUCUGU--CGUCCCGGCc -3'
miRNA:   3'- uGGGGGGCA-GAGGCGuuGUGGGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 180470 0.66 0.702258
Target:  5'- --gCUCCGUUcgCGCAGCGCCCUGGg -3'
miRNA:   3'- uggGGGGCAGagGCGUUGUGGGGCCg -5'
1537 3' -62.9 NC_001347.2 + 189756 0.74 0.284966
Target:  5'- cCCCCCCGUCUCCGguGaaagGCCggGGCa -3'
miRNA:   3'- uGGGGGGCAGAGGCguUg---UGGggCCG- -5'
1537 3' -62.9 NC_001347.2 + 190651 0.75 0.249878
Target:  5'- aACUCCaCCGUCUgCCGCGguuGCACCCCGa- -3'
miRNA:   3'- -UGGGG-GGCAGA-GGCGU---UGUGGGGCcg -5'
1537 3' -62.9 NC_001347.2 + 191210 0.68 0.636567
Target:  5'- cGCCgCUCGgagCaCCGCcGCAgCCCGGCu -3'
miRNA:   3'- -UGGgGGGCa--GaGGCGuUGUgGGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 192173 0.69 0.542918
Target:  5'- uUCCgCCGUCUCCGgAugaGCGgCCgCGGCg -3'
miRNA:   3'- uGGGgGGCAGAGGCgU---UGUgGG-GCCG- -5'
1537 3' -62.9 NC_001347.2 + 192467 0.71 0.445784
Target:  5'- cGCCUCCCG-CUCacaacgcgUGCAACACcugcgcgaggCCCGGCg -3'
miRNA:   3'- -UGGGGGGCaGAG--------GCGUUGUG----------GGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 195863 0.69 0.574434
Target:  5'- uGCCgCCCGa-UCCGCAGCAUUuucgcuggcucaacgCCGGCg -3'
miRNA:   3'- -UGGgGGGCagAGGCGUUGUGG---------------GGCCG- -5'
1537 3' -62.9 NC_001347.2 + 197140 0.72 0.389257
Target:  5'- gGCCCgCCGUCgUCGC--CGCCCCGGg -3'
miRNA:   3'- -UGGGgGGCAGaGGCGuuGUGGGGCCg -5'
1537 3' -62.9 NC_001347.2 + 204633 0.66 0.736133
Target:  5'- -aCCCCCGaUggcugugcgaguaaCUCCGUug-GCCCCGGUa -3'
miRNA:   3'- ugGGGGGC-A--------------GAGGCGuugUGGGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 222080 0.66 0.728886
Target:  5'- cCCCCCCaaaucauGUCUCUa-GAUGCCgCCGGCc -3'
miRNA:   3'- uGGGGGG-------CAGAGGcgUUGUGG-GGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.