miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1537 3' -62.9 NC_001347.2 + 20343 0.66 0.729794
Target:  5'- cGCCCCaguuCGUCUCCuaauCGACGuguCCgCGGCg -3'
miRNA:   3'- -UGGGGg---GCAGAGGc---GUUGU---GGgGCCG- -5'
1537 3' -62.9 NC_001347.2 + 222080 0.66 0.728886
Target:  5'- cCCCCCCaaaucauGUCUCUa-GAUGCCgCCGGCc -3'
miRNA:   3'- uGGGGGG-------CAGAGGcgUUGUGG-GGCCG- -5'
1537 3' -62.9 NC_001347.2 + 132670 0.66 0.738839
Target:  5'- uCUUgCCGUCgUCCGU--CACCCgGGCg -3'
miRNA:   3'- uGGGgGGCAG-AGGCGuuGUGGGgCCG- -5'
1537 3' -62.9 NC_001347.2 + 128410 0.66 0.738839
Target:  5'- cGCCCCaCGUcCUCCucuuuCAGC-CCCaCGGCg -3'
miRNA:   3'- -UGGGGgGCA-GAGGc----GUUGuGGG-GCCG- -5'
1537 3' -62.9 NC_001347.2 + 21642 0.66 0.746911
Target:  5'- -gCCUuuGUCggCGCGGCucuucucGCCCUGGCg -3'
miRNA:   3'- ugGGGggCAGagGCGUUG-------UGGGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 51568 0.66 0.702258
Target:  5'- gGCCCCgCGgggUCUCCuucgcGCAACAuUCCUGGUc -3'
miRNA:   3'- -UGGGGgGC---AGAGG-----CGUUGU-GGGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 135123 0.66 0.702258
Target:  5'- gGCCCaCCGUCgaccCCG-AGCGCuUCCGGCc -3'
miRNA:   3'- -UGGGgGGCAGa---GGCgUUGUG-GGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 167300 0.67 0.646013
Target:  5'- cGCgCUCCGcCUCCGUGGCACCCUu-- -3'
miRNA:   3'- -UGgGGGGCaGAGGCGUUGUGGGGccg -5'
1537 3' -62.9 NC_001347.2 + 154122 0.67 0.645069
Target:  5'- aACCCCCCG-CUggugccaCCGCcguuguGACGgCCCGGa -3'
miRNA:   3'- -UGGGGGGCaGA-------GGCG------UUGUgGGGCCg -5'
1537 3' -62.9 NC_001347.2 + 68432 0.68 0.640346
Target:  5'- aGCUCCCCGUCgcCCGUAAUgucaauagacaugaaGCCCUGcuGCg -3'
miRNA:   3'- -UGGGGGGCAGa-GGCGUUG---------------UGGGGC--CG- -5'
1537 3' -62.9 NC_001347.2 + 46105 0.67 0.655449
Target:  5'- uCCCgCCGUUUCCGaaCAACccACCCgGGUu -3'
miRNA:   3'- uGGGgGGCAGAGGC--GUUG--UGGGgCCG- -5'
1537 3' -62.9 NC_001347.2 + 41143 0.67 0.655449
Target:  5'- gGCUaCCCCGUCccCCGCGcggaaaucCGCCgCGGCg -3'
miRNA:   3'- -UGG-GGGGCAGa-GGCGUu-------GUGGgGCCG- -5'
1537 3' -62.9 NC_001347.2 + 21745 0.67 0.655449
Target:  5'- uACCgucggUCCUGUCUCUGCucuGCGCUaCGGCg -3'
miRNA:   3'- -UGG-----GGGGCAGAGGCGu--UGUGGgGCCG- -5'
1537 3' -62.9 NC_001347.2 + 166618 0.67 0.66487
Target:  5'- cACCgucaCgCCGUcCUCCGagaGGCGCgCCCGGCc -3'
miRNA:   3'- -UGGg---G-GGCA-GAGGCg--UUGUG-GGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 75391 0.67 0.66487
Target:  5'- cUCCCCCG-CUCCaagcgggaGCGGCGgCCgUGGCg -3'
miRNA:   3'- uGGGGGGCaGAGG--------CGUUGU-GGgGCCG- -5'
1537 3' -62.9 NC_001347.2 + 67357 0.67 0.674268
Target:  5'- aGCCgCCgCCGUCgCCGC--CGCCUCGGa -3'
miRNA:   3'- -UGG-GG-GGCAGaGGCGuuGUGGGGCCg -5'
1537 3' -62.9 NC_001347.2 + 74025 0.67 0.683636
Target:  5'- aACCaaaggacgaCCCGUCUCCccccGCACCCgGGUu -3'
miRNA:   3'- -UGGg--------GGGCAGAGGcgu-UGUGGGgCCG- -5'
1537 3' -62.9 NC_001347.2 + 225497 0.67 0.683636
Target:  5'- uGCUgCCCCGgcguUCUCCagaa-GCCCCGGCg -3'
miRNA:   3'- -UGG-GGGGC----AGAGGcguugUGGGGCCG- -5'
1537 3' -62.9 NC_001347.2 + 114435 0.67 0.683636
Target:  5'- cGCCgCCCGUCUCaGcCAGCGCcugugucaCCCGcGCu -3'
miRNA:   3'- -UGGgGGGCAGAGgC-GUUGUG--------GGGC-CG- -5'
1537 3' -62.9 NC_001347.2 + 135786 0.67 0.683636
Target:  5'- gACCCcggguCCCGUCcauUCCGCGGCggguggACCgggaagCCGGCg -3'
miRNA:   3'- -UGGG-----GGGCAG---AGGCGUUG------UGG------GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.