Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1537 | 5' | -55.7 | NC_001347.2 | + | 4639 | 0.71 | 0.804179 |
Target: 5'- aGGCCuGAACGCcaagCGAAggUCCCUc- -3' miRNA: 3'- gCCGGuCUUGCGa---GCUUuuGGGGGcu -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 23256 | 0.68 | 0.918648 |
Target: 5'- aCGGCCuGGGCGCcCcc--ACCCCCGc -3' miRNA: 3'- -GCCGGuCUUGCGaGcuuuUGGGGGCu -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 35255 | 0.68 | 0.924034 |
Target: 5'- aGGCCgcGGGguACGgaCUCGAAGGCgCCCGGu -3' miRNA: 3'- gCCGG--UCU--UGC--GAGCUUUUGgGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 39547 | 0.77 | 0.479286 |
Target: 5'- gGGCCAuGGGCGC-CGGAcACCUCCGAc -3' miRNA: 3'- gCCGGU-CUUGCGaGCUUuUGGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 59819 | 0.66 | 0.971588 |
Target: 5'- aGGCCuacgccguGGGGCaGUUUGAGcAGCCCaCCGAg -3' miRNA: 3'- gCCGG--------UCUUG-CGAGCUU-UUGGG-GGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 75992 | 0.68 | 0.924034 |
Target: 5'- gGGUCGGccaGCUCGcAGAGCUCCUGGu -3' miRNA: 3'- gCCGGUCuugCGAGC-UUUUGGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 79191 | 0.68 | 0.924034 |
Target: 5'- gCGGcCCAGAGCGUgucggccgauuUCGAaaugGAGgCCCUGAu -3' miRNA: 3'- -GCC-GGUCUUGCG-----------AGCU----UUUgGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 80142 | 0.66 | 0.965754 |
Target: 5'- uGaGCCGGAaaaaccgcagGCcCUCGGAAGCCaCCCGc -3' miRNA: 3'- gC-CGGUCU----------UGcGAGCUUUUGG-GGGCu -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 81407 | 0.73 | 0.712215 |
Target: 5'- uGGCCAGcacGCGCUCGAccAAAUCCaCGAu -3' miRNA: 3'- gCCGGUCu--UGCGAGCU--UUUGGGgGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 87745 | 0.7 | 0.821076 |
Target: 5'- gCGGCCAGAccuCGC-CGAAGGagCCCUGGc -3' miRNA: 3'- -GCCGGUCUu--GCGaGCUUUUg-GGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 94768 | 0.67 | 0.938847 |
Target: 5'- aGGCgGucGCGCUCGAccACCuCCUGGa -3' miRNA: 3'- gCCGgUcuUGCGAGCUuuUGG-GGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 112132 | 0.66 | 0.968768 |
Target: 5'- cCGGCCuGAGCGCgcucagcuaccUUGGc-ACCUCCGGa -3' miRNA: 3'- -GCCGGuCUUGCG-----------AGCUuuUGGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 131861 | 0.66 | 0.9555 |
Target: 5'- uCGGcCCGGuGCGa-CGGAGGgCCCCGAc -3' miRNA: 3'- -GCC-GGUCuUGCgaGCUUUUgGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 132977 | 0.71 | 0.804179 |
Target: 5'- uGGUCAGAugGaacgucgucgguCUCGAGcgcCCCCCGAu -3' miRNA: 3'- gCCGGUCUugC------------GAGCUUuu-GGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 134352 | 0.67 | 0.951663 |
Target: 5'- uCGGCCAGGGgGUacCGAGGcgguGCCCgCGAc -3' miRNA: 3'- -GCCGGUCUUgCGa-GCUUU----UGGGgGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 135374 | 0.67 | 0.94761 |
Target: 5'- gCGGCUAG---GC-CGAgGGACCCCCGGu -3' miRNA: 3'- -GCCGGUCuugCGaGCU-UUUGGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 135407 | 0.66 | 0.9555 |
Target: 5'- gCGGCCGGAcC-CUCGAGAggggggaggggaGCCCaaCCGGa -3' miRNA: 3'- -GCCGGUCUuGcGAGCUUU------------UGGG--GGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 135679 | 0.7 | 0.837331 |
Target: 5'- gGGCCGGGAaggggaGCUgGGugggGGAUCCCCGGu -3' miRNA: 3'- gCCGGUCUUg-----CGAgCU----UUUGGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 135891 | 0.73 | 0.692789 |
Target: 5'- gGGUgGGAAgccccCGCUCGGGucCCCCCGGg -3' miRNA: 3'- gCCGgUCUU-----GCGAGCUUuuGGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 135963 | 0.71 | 0.781347 |
Target: 5'- cCGGCCGGGcCGUcggaugggggggUCGAGcggggggaggggaggGACCCCCGGc -3' miRNA: 3'- -GCCGGUCUuGCG------------AGCUU---------------UUGGGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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